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knowledge-graph

tessl install github:jdrhyne/agent-skills --skill knowledge-graph

github.com/jdrhyne/agent-skills

Three-Layer Memory System — automatic fact extraction, entity-based knowledge graph, and weekly synthesis. Manages life/areas/ entities with atomic facts and living summaries.

Review Score

60%

Validation Score

12/16

Implementation Score

77%

Activation Score

17%

Knowledge Graph Skill

Manages a Three-Layer Memory System for compounding knowledge across sessions.

Architecture

The Three Layers

  1. Entity Knowledge (life/areas/) — Structured facts about people, companies, and projects stored as atomic JSONL entries with living summaries
  2. Daily Notes (memory/YYYY-MM-DD.md) — Session logs, decisions, and events captured chronologically
  3. Persistent Memory (MEMORY.md or equivalent) — High-level patterns, preferences, and agent-wide context

The knowledge graph (Layer 1) is the durable, structured layer. Daily notes feed it; synthesis distills it.

The Compounding Flywheel

Conversations → Daily Notes → Fact Extraction (cron) → Entity Facts
                                                            ↓
                              Weekly Synthesis (cron) → Living Summaries
                                                            ↓
                                          Richer Context → Better Conversations

Every conversation makes your agent smarter. Facts compound. Summaries stay fresh. Context improves over time.

When to Use

  • Fact Extraction (cron): Extract durable facts from recent conversations
  • Weekly Synthesis (cron): Rewrite summaries, prune stale facts
  • Entity Lookup: When any agent needs context about a person, company, or project
  • Manual: User says "remember that...", "update X's info", "what do we know about Y"

Directory Structure

<workspace>/life/areas/
├── people/<slug>/       → summary.md + facts.jsonl
├── companies/<slug>/    → summary.md + facts.jsonl
└── projects/<slug>/     → summary.md + facts.jsonl

Fact Schema (JSONL — one object per line)

{
  "id": "<slug>-NNN",
  "fact": "The actual fact in plain English",
  "category": "relationship|milestone|status|preference|context|decision",
  "ts": "YYYY-MM-DD",
  "source": "conversation|manual|inference",
  "status": "active|superseded",
  "supersedes": "<id>"
}

Rules

  1. Append-only — never edit or delete lines in facts.jsonl
  2. Supersede, don't delete — when a fact changes, add a new fact with "supersedes": "<old-id>" and mark the old fact's status as "superseded" (edit that one line)
  3. Auto-increment IDs — <slug>-001, <slug>-002, etc.
  4. Be atomic — one fact per entry, not paragraphs
  5. Skip ephemera — no "user said hi", no transient chat

What Qualifies as a Durable Fact

✅ Extract:

  • Relationship changes (new job, new team, promotions)
  • Life milestones (moved cities, had a baby, started a project)
  • Status changes (left company, started freelancing)
  • Stated preferences ("I prefer X over Y")
  • Key decisions ("decided to use Rust for the backend")
  • Important context ("allergic to shellfish", "works night shifts")

❌ Skip:

  • Casual conversation, jokes, greetings
  • Temporary states ("feeling tired today")
  • Already-known facts (check existing facts first)
  • Vague or uncertain information

Task: Fact Extraction (Cron — Every 4 Hours)

1. Read today's daily note: memory/YYYY-MM-DD.md
2. Read recent conversation context (last few hours)
3. For each durable fact found:
   a. Determine entity type (person/company/project) and slug
   b. Create entity folder if new: mkdir -p life/areas/<type>/<slug>
   c. Check existing facts.jsonl — skip if already known
   d. If fact contradicts existing: supersede the old one
   e. Append new fact to facts.jsonl
4. Log extraction count to daily note

Cost target: Use the cheapest available model. Should cost < $0.01/day.

Task: Weekly Synthesis (Sunday Cron)

1. List all entities in life/areas/
2. For each entity with facts modified this week:
   a. Load all facts from facts.jsonl
   b. Filter to status: "active" only
   c. Write a new summary.md (3-8 lines):
      - Who/what is this entity
      - Current relationship/status
      - Key active facts
      - Last updated date
   d. Mark any contradicted facts as superseded
3. Produce a brief synthesis report in daily note

Task: Entity Lookup

When an agent needs context about an entity:

1. Check life/areas/<type>/<slug>/summary.md first (cheap)
2. Only load facts.jsonl if summary is stale or more detail needed
3. Use memory_search as fallback for entities not yet in the graph

Low-token Recall Policy

To minimize token usage, recall should be triggered, not automatic.

Rules

  1. Only recall on triggers:

    • Proper nouns (names of people, companies, projects you track)
    • Explicit recall phrases: "remember", "recall", "what do we know about"
    • Project keywords that match entity slugs

  2. Inject summary.md only (max 5 lines) — never inject facts.jsonl unless:

    • User explicitly asks for details/specifics
    • Summary is stale or missing
    • Contradictory information needs resolution

  3. Use a single profile summary when the topic is preferences or planning

Why This Matters

  • No recall unless triggered — most messages skip recall entirely
  • Summaries only — very short injections (5 lines vs potentially hundreds of facts)
  • No raw facts unless requested — keeps context window lean

Add to AGENTS.md

### Low-token Recall Policy
- Only recall on triggers (proper nouns, "remember/recall", or project keywords).
- Inject summary.md only (max 5 lines); never inject facts.jsonl unless asked.
- Use a single profile summary when preferences/planning are the topic.

Add to HEARTBEAT.md

## Low-token Recall (Rule)
- [ ] Only recall on triggers (proper nouns, "remember/recall", project keywords)
- [ ] Inject summary.md only (max 5 lines) unless user explicitly asks for details

Creating New Entities

When you encounter a new person/company/project worth tracking:

# Create structure
mkdir -p life/areas/people/alice

# Write initial fact
echo '{"id":"alice-001","fact":"Frontend engineer at Acme Corp, works on the design system","category":"context","ts":"2026-01-15","source":"conversation","status":"active"}' > life/areas/people/alice/facts.jsonl

# Write initial summary
cat > life/areas/people/alice/summary.md << 'EOF'
# Alice
Frontend engineer at Acme Corp.
Works on the design system team.
_Last updated: 2026-01-15_
EOF

Integration with Other Layers

  • Layer 2 (Daily Notes) → Source material for fact extraction
  • Layer 3 (MEMORY.md) → Patterns/preferences stay there; entity facts come here
  • memory_search → Indexes summaries for semantic lookup

Setup

1. Create Directory Structure

mkdir -p life/areas/people
mkdir -p life/areas/companies
mkdir -p life/areas/projects

Optionally create a life/README.md explaining the structure for your own reference.

2. Add to AGENTS.md

Add this block to your workspace's AGENTS.md:

## Knowledge Graph — Three-Layer Memory

### Layer 1: Entity Knowledge (`life/areas/`)
- `people/` — Person entities
- `companies/` — Company/org entities
- `projects/` — Project entities

Each entity has: `summary.md` (quick context) + `facts.jsonl` (atomic facts).

**Retrieval order:** summary.md first → facts.jsonl only if more detail needed.

**Rules:**
- Save durable facts to the relevant entity's `facts.jsonl` (append-only JSONL)
- Never delete facts — supersede instead (`"status":"superseded","supersedes":"old-id"`)
- When encountering a new notable entity, create its folder + initial fact + summary
- Cron handles periodic extraction and weekly synthesis — manual saves welcome too

See `skills/knowledge-graph/SKILL.md` and `life/README.md` for full conventions.

3. Create Cron Jobs

Set up two cron jobs in your Clawdbot config:

Fact Extraction — runs every 4 hours:

crons:
  - name: fact-extraction
    schedule: "0 */4 * * *"
    task: >
      Run the fact extraction task from skills/knowledge-graph/SKILL.md.
      Read today's daily notes and recent conversations.
      Extract durable facts into life/areas/ entities.
      Use the cheapest available model.

Weekly Synthesis — runs every Sunday:

- name: weekly-synthesis
    schedule: "0 9 * * 0"
    task: >
      Run the weekly synthesis task from skills/knowledge-graph/SKILL.md.
      Rewrite summaries for all entities modified this week.
      Mark contradicted facts as superseded.
      Log a synthesis report to today's daily note.

4. Multi-Agent Setups (Optional)

If you run multiple agents that share a workspace, symlink life/ so all agents read from the same knowledge graph:

# From each agent's workspace
ln -s /path/to/primary-workspace/life ./life

All agents will read/write to the same entity store. The cron jobs only need to run from one agent.

Links

  • GitHub