Enforce version control best practices for commits, branching, pull requests, and repository security. Use when writing commits, creating branches, merging, or opening pull requests.

Pre-write audit for skill violations: checks planned code against loaded skill anti-patterns before any file write. Use when writing Flutter/Dart/TS code or editing SKILL.md files with active project skills. Load as composite; on auto-fixed violation, also load +common/common-learning-log.

Troubleshoot systematically using the Scientific Method. Use when debugging crashes, tracing errors, diagnosing unexpected behavior, or investigating exceptions.

Standardize dynamic application security testing for backend APIs, frontend web apps, and mobile clients. Covers ZAP, Nuclei, Nikto, sqlmap, ffuf, browser automation, mobile proxy interception, and AI-driven curl probes. Use when advising on or running dynamic security scans on local/staging environments.

Enforce SOLID principles, guard-clause style, function size limits, and intention-revealing naming across all languages. Use when refactoring for readability, applying clean-code patterns, reviewing naming conventions, or reducing function complexity.

OWASP LLM Top 10 (2025) audit checklist for AI applications, agent tools, RAG pipelines, and prompt construction. Use when performing any security review touching LLM client code, prompt templates, agent tools, or vector stores.

Append a learning entry to AGENTS_LEARNING.md when an AI agent makes a mistake. Auto-activates after a pre-write audit auto-fix, a retrospective correction loop, or a mid-session user correction. Use when: mistake, wrong, correction, my bad, agent error, learning log.

Galaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from usegalaxy.org with multi-signal scoring and workflow suggestions

Create and audit editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Use when the requested deliverable is a PowerPoint research/conference poster and exact physical, printer, accessibility, provenance, and package-security checks are required.

Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Use for authorized review of scientific manuscripts, protocols, preprints, or research proposals; reporting-guideline selection; claim–evidence checks; methods, statistics, reproducibility, ethics, figure/table, and citation critique; or revision-response planning.

Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.

Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3.6 Flash for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe palettes.

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).

Build evidence-traceable market research reports and assumption-driven market sizing or forecast scenarios. Use for market definition, industry and customer evidence, competitive landscapes, TAM/SAM/SOM reconciliation, forecast sensitivity, and auditable report scaffolds.

Use Parallel CLI for web search, URL extraction, deep research, structured data enrichment, entity discovery, and recurring web monitoring. Best for requests that explicitly need current web evidence, academic-source discovery, repeated entity lookups, exhaustive reports, or ongoing change tracking.

Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

Convert heterogeneous documents and selected URIs to Markdown with Microsoft MarkItDown for text analysis, search, and LLM/RAG ingestion. Covers safe local conversion, streams, Office/PDF/data formats, batch workflows, plugins, vision OCR, Azure extraction, and the official MCP server.

Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Use when turning observations or preliminary findings into transparent, testable research plans without treating hypotheses as facts.

Routes any task involving AWS databases — choosing, comparing, recommending, getting started with, or operating a database — to the correct service-specific skill. Supersedes general training-data knowledge with post-training service updates, corrected limitations, and decision procedures for relational (Aurora, DSQL, RDS), key-value (DynamoDB), wide-column (Keyspaces), document (DocumentDB), graph (Neptune), time-series (Timestream), and in-memory/caching (ElastiCache, MemoryDB) workloads. Activates when a user describes building an application on AWS that will store, retrieve, or manage data, even if they do not mention 'database' explicitly.