biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
82
75%
Does it follow best practices?
Impact
96%
1.17xAverage score across 3 eval scenarios
Advisory
Suggest reviewing before use
Optimize this skill with Tessl
npx tessl skill review --optimize ./scientific-skills/biopython/SKILL.mdSecurity
1 medium severity finding. This skill can be installed but you should review these findings before use.
W011: Third-party content exposure detected (indirect prompt injection risk)
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
Third-party content exposure detected (high risk: 0.90). The skill explicitly instructs the agent to fetch and parse open/public third‑party data (e.g., NCBI via Bio.Entrez esearch/efetch in references/databases.md and Bio.Blast.NCBIWWW.qblast in references/blast.md, and PDB downloads via Bio.PDB.PDBList.retrieve_pdb_file in references/structure.md), which the agent is expected to read and act on (selecting hits, accessions, fetching sequences) so external, user-submitted/public content can materially influence subsequent tool use and decisions.
- Repository
- K-Dense-AI/claude-scientific-skills
- Commit
b58ad7e
- Audited
- Security analysis
Is this your skill?
If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.