flowio

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.

2.27x

Quality

66%

Does it follow best practices?

Impact

91%

2.27x

Average score across 3 eval scenarios

Securityby

Passed

No known issues

Optimize this skill with Tessl

npx tessl skill review --optimize ./scientific-skills/flowio/SKILL.md

Evaluation results

82%

42%

FCS File Catalog Tool for Multi-Experiment Archive

Memory-efficient metadata extraction

Criteria

Without context

With context

uv install command

100%

only_text parameter used

100%

pnn_labels access

100%

pns_labels access

100%

event_count and channel_count

100%

Standard metadata keywords

100%

scatter_indices access

100%

fluoro_indices access

100%

time_index access

100%

Error handling present

FlowKit recommendation

100%

77%

Flow Cytometry Data Normalization and Export Pipeline

FCS file creation and data modification

Criteria

Without context

With context

create_fcs import and use

100%

opt_channel_names parameter

100%

metadata dict passed to create_fcs

25%

100%

preprocess=False for modification

100%

Extract-modify-recreate pattern

50%

100%

Original metadata preserved

30%

100%

pns_labels preserved

100%

pnn_labels as channel names

100%

FCS 3.1 float output acknowledged

50%

100%

uv install used

100%

Output file produced

100%

92%

33%

Robust FCS Ingestion Service for Heterogeneous File Sources

Error handling and multi-dataset support

Criteria

Without context

With context

FCSParsingError import

100%

DataOffsetDiscrepancyError import

100%

MultipleDataSetsError import

100%

ignore_offset_discrepancy recovery

50%

100%

FCSParsingError recovery

50%

100%

read_multiple_data_sets used

83%

100%

nextdata_offset mechanism

50%

100%

Distinct except blocks

100%

Result output produced

100%

uv install used

read_multiple_data_sets iterates all datasets

100%

Repository: K-Dense-AI/claude-scientific-skills
Commit: b58ad7e

Evaluated: 27 days ago
Agent: Claude Code
Model: Claude Sonnet 4.6

Table of Contents

FCS File Catalog Tool for Multi-Experiment Archive Flow Cytometry Data Normalization and Export Pipeline Robust FCS Ingestion Service for Heterogeneous File Sources

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