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geniml

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.

74

1.74x
Quality

71%

Does it follow best practices?

Impact

68%

1.74x

Average score across 3 eval scenarios

SecuritybySnyk

Advisory

Suggest reviewing before use

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npx tessl skill review --optimize ./scientific-skills/geniml/SKILL.md
SKILL.md
Quality
Evals
Security

Security

1 medium severity finding. This skill can be installed but you should review these findings before use.

Medium

W011: Third-party content exposure detected (indirect prompt injection risk)

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

Third-party content exposure detected (high risk: 0.70). The skill ingests public, potentially user-provided data (e.g., remote BED files via BBClient described in references/utilities.md and pre-trained models from Hugging Face referenced in references/scembed.md) as part of mandatory tokenization/training/search workflows, so untrusted third-party content can be read and materially influence model outputs and downstream actions.

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Repository
K-Dense-AI/claude-scientific-skills
Audited
Security analysis
Snyk

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