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geo-database

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

72

1.02x
Quality

66%

Does it follow best practices?

Impact

80%

1.02x

Average score across 3 eval scenarios

SecuritybySnyk

Advisory

Suggest reviewing before use

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npx tessl skill review --optimize ./scientific-skills/geo-database/SKILL.md
SKILL.md
Quality
Evals
Security

Security

1 medium severity finding. This skill can be installed but you should review these findings before use.

Medium

W011: Third-party content exposure detected (indirect prompt injection risk)

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

Third-party content exposure detected (high risk: 0.80). The skill explicitly fetches and parses public, user-submitted GEO content (via GEOparse.get_GEO, NCBI E-utilities like Entrez.esearch/efetch, and direct FTP/wget to ftp.ncbi.nlm.nih.gov) and uses sample/platform metadata (e.g., filtering control/treatment samples) to drive analysis, so untrusted third-party data can influence tool behavior and next actions.

Report incorrect finding
Repository
K-Dense-AI/claude-scientific-skills
Audited
Security analysis
Snyk

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