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lamindb

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.

73

1.32x
Quality

67%

Does it follow best practices?

Impact

74%

1.32x

Average score across 3 eval scenarios

SecuritybySnyk

Advisory

Suggest reviewing before use

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npx tessl skill review --optimize ./scientific-skills/lamindb/SKILL.md
SKILL.md
Quality
Evals
Security

Security

1 medium severity finding. This skill can be installed but you should review these findings before use.

Medium

W011: Third-party content exposure detected (indirect prompt injection risk)

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

Third-party content exposure detected (high risk: 0.90). The skill explicitly ingests open third-party content (e.g., references/integrations.md shows saving artifacts from arbitrary HTTP/HTTPS URLs and a REST API example like requests.get("https://api.example.com/data"), references/ontologies.md and annotation-validation.md show bt.lookup(public=True) and bt.import_source() for public ontologies, and HuggingFace/S3 examples), and those external sources are read/standardized/used in curation and downstream actions (standardize, validate, save artifacts), so untrusted public content can materially influence tool use and decisions.

Report incorrect finding
Repository
K-Dense-AI/claude-scientific-skills
Audited
Security analysis
Snyk

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