metabolomics-workbench-database

Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.

1.57x

Quality

77%

Does it follow best practices?

Impact

99%

1.57x

Average score across 3 eval scenarios

Securityby

Advisory

Suggest reviewing before use

Optimize this skill with Tessl

npx tessl skill review --optimize ./scientific-skills/metabolomics-workbench-database/SKILL.md

Evaluation results

100%

Metabolite Study Finder

RefMet standardization and study discovery workflow

Criteria

Without context

With context

RefMet match endpoint

100%

Standardize before search

100%

Study search uses standardized name

100%

Correct study search endpoint

100%

JSON output format

100%

All three metabolites processed

100%

standardized_name field populated

100%

study_count matches studies array

100%

Uses requests library

100%

Correct API base URL

100%

37%

Unknown Peak Identification from LC-MS Data

Mass spectrometry compound identification with correct adducts and tolerance

Criteria

Without context

With context

Positive mode adduct

100%

High-resolution tolerance

78%

100%

Correct moverz database

100%

Compound details retrieved

25%

100%

moverz URL structure

62%

100%

All three peaks searched

100%

JSON output format

100%

Uses requests library

100%

Correct API base URL

100%

Output file written

100%

98%

70%

Metabolomics Study Landscape Analysis for Alzheimer's Disease

MetStat disease-specific study filtering with multi-parameter format

Criteria

Without context

With context

MetStat endpoint used

100%

Semicolon-delimited format

100%

Correct parameter positions

80%

Species parameter set

100%

Empty positions skipped

100%

Both platforms queried

100%

Study summary retrieval

100%

JSON output format

100%

Output file written

100%

Correct API base URL

80%

100%

Repository: K-Dense-AI/claude-scientific-skills
Commit: 71add64

Evaluated: 27 days ago
Agent: Claude Code
Model: Claude Sonnet 4.6

Table of Contents

Metabolite Study Finder Unknown Peak Identification from LC-MS Data Metabolomics Study Landscape Analysis for Alzheimer's Disease

Is this your skill?

If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.