pubmed-database

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.

1.16x

Quality

78%

Does it follow best practices?

Impact

72%

1.16x

Average score across 3 eval scenarios

Securityby

Advisory

Suggest reviewing before use

Optimize this skill with Tessl

npx tessl skill review --optimize ./scientific-skills/pubmed-database/SKILL.md

Evaluation results

85%

10%

PubMed Literature Monitor: Automated Abstract Extraction Tool

Programmatic PubMed data extraction with Python

Criteria

Without context

With context

Uses Bio.Entrez

ESearch usage

87%

100%

EFetch usage

87%

100%

History server for large sets

100%

Batched retrieval

100%

Rate limit compliance

100%

User-Agent or email header

100%

Local caching

100%

Retry / exponential backoff

100%

README with install instructions

100%

80%

Systematic Review Search Protocol: Hypertension Drug Therapy in Elderly Patients

Advanced PubMed search query construction and field tags

Criteria

Without context

With context

PICO framework used

100%

MeSH [mh] tag

90%

100%

MeSH subheading

Drug substance [nm] tag

[tiab] tag usage

100%

Publication type [pt] filter

100%

Date range [dp] syntax

87%

100%

Free full text filter

75%

100%

Synonyms with OR

100%

Boolean AND grouping

100%

Language filter

100%

Elderly population term

100%

53%

16%

Reference Library Cleanup: Batch Citation Lookup and Export

Citation matching, export formats, and batch operations

Criteria

Without context

With context

ECitMatch endpoint used

Pipe-delimited citation format

ELink for related articles

86%

66%

EPost for batch UID upload

.nbib export format

100%

Batch export API format

66%

100%

User-Agent or email identification

100%

Output files present

100%

Repository: K-Dense-AI/claude-scientific-skills
Commit: 71add64

Evaluated: 27 days ago
Agent: Claude Code
Model: Claude Sonnet 4.6

Table of Contents

PubMed Literature Monitor: Automated Abstract Extraction Tool Systematic Review Search Protocol: Hypertension Drug Therapy in Elderly Patients Reference Library Cleanup: Batch Citation Lookup and Export

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