reactome-database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

1.10x

Quality

61%

Does it follow best practices?

Impact

77%

1.10x

Average score across 3 eval scenarios

Securityby

Passed

No known issues

Optimize this skill with Tessl

npx tessl skill review --optimize ./scientific-skills/reactome-database/SKILL.md

Evaluation results

90%

Mouse Knockout Study: Human Pathway Impact Analysis

Species projection and token management

Criteria

Without context

With context

Species projection endpoint

100%

Content-Type header

100%

Batch submission

100%

Token extracted

100%

FDR filtering

100%

PathwayBrowser URL

100%

PathwayBrowser URL format

62%

100%

Token retrieval endpoint

AnalysisService base URL

100%

Plain text identifier format

100%

17%

RNA-seq Expression Pathway Analysis for Cancer Biomarker Study

Expression data format and analysis

Criteria

Without context

With context

TSV format

100%

Header starts with '#'

100%

Period decimal separator

100%

Content-Type header

100%

Batch submission

100%

Token extracted

100%

FDR filtering

100%

PathwayBrowser URL

70%

100%

AnalysisService endpoint

42%

100%

Token saved for retrieval

100%

42%

DNA Damage Response Pathway Documentation

Helper script usage and REST API preference

Criteria

Without context

With context

Helper script used

query command used

entities command used

search command used

analyze command used

version command used

uv install if reactome2py used

100%

No reactome2py imports

100%

ContentService base URL

100%

AnalysisService base URL

100%

Repository: K-Dense-AI/claude-scientific-skills
Commit: 71add64

Evaluated: about 2 months ago
Agent: Claude Code
Model: Claude Sonnet 4.6

Table of Contents

Mouse Knockout Study: Human Pathway Impact Analysis RNA-seq Expression Pathway Analysis for Cancer Biomarker Study DNA Damage Response Pathway Documentation

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