uniprot-database

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.

1.04x

Quality

86%

Does it follow best practices?

Impact

92%

1.04x

Average score across 6 eval scenarios

Securityby

Passed

No known issues

Evaluation results

92%

Human Kinase Disease Association Report

Query syntax & field selection

Criteria

Without context

With context

Reviewed filter

100%

Field-specific query syntax

100%

Explicit format selection

100%

Field selection parameter

100%

Correct field name prefixes

100%

Correct search endpoint URL

Boolean operators

100%

Human organism filter

100%

Provided script usage

100%

Output written to file

100%

97%

Cross-Reference Gene Panel to Structural Database

ID mapping workflow

Criteria

Without context

With context

Submit job endpoint

100%

Status polling endpoint

100%

Results retrieval endpoint

100%

Case-sensitive database names

100%

Handles failedIds

60%

70%

Polling loop with wait

100%

Provided script usage

100%

Results saved to file

100%

Input IDs from file

100%

Summary stats output

100%

98%

Proteome Sequence Dataset for ML Training

Streaming & rate limiting

Criteria

Without context

With context

Stream endpoint used

100%

Reviewed filter applied

100%

Rate limiting implemented

80%

Results cached locally

100%

Streaming chunked processing

100%

Explicit format selection

100%

Provided script usage

100%

TrEMBL quality note

100%

Field selection used

100%

Output file produced

100%

79%

Protein Sequence Export for Multiple Sequence Alignment

Batch & individual sequence retrieval

Criteria

Without context

With context

Helper script used

100%

FASTA format for sequences

100%

batch_retrieve or OR-query used

100%

Extended accession handled

100%

Accession format recognition

Output FASTA written to file

100%

Reviewed filter for search

Explicit format parameter

100%

Single-entry retrieval endpoint

100%

50%

Retrieval count summary

100%

86%

-4%

Cross-Database Pathway Annotation Tool

Multi-database bioservices preference

Criteria

Without context

With context

bioservices package used

100%

70%

Multiple databases queried

100%

No direct UniProt REST for primary workflow

100%

66%

Results joined across databases

100%

Output written to file

100%

Reviewed filter applied

100%

Design choice documented

70%

Field selection used

100%

Rate limiting or delay

100%

18%

Human Transporter Protein Catalog

Pagination and advanced query syntax

Criteria

Without context

With context

Pagination loop implemented

100%

Range query syntax

100%

Wildcard in query

100%

Boolean grouping with parentheses

100%

Reviewed filter applied

100%

Field selection specified

100%

Helper script used

100%

Organism filter applied

100%

Total count reported

100%

Results written to file

100%

Repository: K-Dense-AI/claude-scientific-skills
Commit: 71add64

Evaluated: about 1 month ago
Agent: Claude Code
Model: Claude Sonnet 4.6

Table of Contents

Human Kinase Disease Association Report Cross-Reference Gene Panel to Structural Database Proteome Sequence Dataset for ML Training Protein Sequence Export for Multiple Sequence Alignment Cross-Database Pathway Annotation Tool Human Transporter Protein Catalog

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