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dnanexus-integration

Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Use for DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.

75

Quality

92%

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SKILL.md
Quality
Evals
Security

Quality

Content

92%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured, executable skill body with strong sequencing, validation checkpoints, and clean one-level-deep references that all resolve. The only minor lever is trimming the platform-guidance and citation sections for maximal token efficiency.

DimensionReasoningScore

Conciseness

Information-dense and assumes Claude's competence with no padding about basic concepts, but sections like Current Platform Guidance and the citation block could be trimmed slightly to reach the lean top anchor.

4 / 5

Actionability

Fully executable, copy-paste-ready dx CLI and dxpy Python examples with specific flags cover the common cases — upload/download, find with glob, build, run with cost-limit, monitor, and job chaining via output refs.

5 / 5

Workflow Clarity

Workflows are clearly sequenced with explicit validation checkpoints (preflight resolve IDs, confirm before billable launch, validate dxapp.json before build, re-describe remote state before classifying failures), matching the feedback-loop expectation for destructive/batch operations.

5 / 5

Progressive Disclosure

Clear overview with a decision table and a Reference Index pointing one level deep to nine existing reference files and two scripts; every referenced path resolves to a real bundle file and content is appropriately split.

5 / 5

Total

19

/

20

Passed

Description

92%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, specific description that names concrete capabilities and an explicit use-trigger for a well-scoped DNAnexus niche. It could add a few user-natural synonyms and file-extension terms to push trigger quality to the top anchor.

Suggestions

Add user-natural synonyms and file-extension triggers (e.g., 'genomics pipelines', '.bam/.fastq/.vcf files', 'biocompute') alongside the platform-internal terms to lift trigger_term_quality.

Consider phrasing the 'when' clause as 'Use when the user mentions DNAnexus, genomics data transfers, or dxapp/applet development' to surface the most common natural phrasings.

DimensionReasoningScore

Specificity

Lists multiple concrete actions across several interfaces — 'Build and operate reproducible genomics workloads', 'data transfers, dxapp.json development, execution monitoring, workflow import, and project automation' — giving comprehensive coverage of capabilities.

5 / 5

Completeness

Explicitly answers both 'what' ('Build and operate reproducible genomics workloads on DNAnexus with...') and 'when' ('Use for DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.') with concrete trigger phrases.

5 / 5

Trigger Term Quality

Good coverage of natural DNAnexus terms ('data transfers', 'dxapp.json', 'execution monitoring', 'workflow import'), but it leans on platform-internal jargon and omits common synonyms and file-extension triggers a user might actually say.

4 / 5

Distinctiveness Conflict Risk

Occupies a clearly distinct DNAnexus-only niche with platform-specific triggers (dx CLI, dxpy, dxCompiler, dxapp.json), giving minimal overlap or conflict risk with other skills.

5 / 5

Total

19

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
K-Dense-AI/scientific-agent-skills
Reviewed

Table of Contents

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