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opentrons-integration

Authors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis. Use pylabrobot instead when one workflow must support multiple robot vendors.

76

Quality

95%

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SKILL.md
Quality
Evals
Security

Quality

Content

88%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A high-quality, safety-minded skill body: executable skeletons, exact pinned tooling, layered validation with checklists, and a well-organized one-level-deep reference bundle. The only deductions are trimmable citation boilerplate and the two requirements files referenced in commands but missing from the bundle.

Suggestions

Trim or relocate the ~16-line 'Citing Scientific Agent Skills' section to a reference file; it consumes body tokens without aiding protocol execution.

Add the missing requirements-flex.txt and requirements-ot2.txt to the bundle, or replace the `uv pip install -r` commands with explicit inline package pins so the commands are runnable as written.

Consolidate the overlapping pre-execution guidance between the Safety Boundary section and step 7 (Validate in layers) into a single checklist to reduce repetition.

DimensionReasoningScore

Conciseness

The body is dense with non-obvious, skill-specific knowledge (pinned uv simulation commands, API-level feature gates 2.20–2.30, the warning that the 10.0.0 constant reports 2.31 while the documented robot maximum is 2.30, and the semantics of new_tip="always" within complex commands) and does not explain concepts Claude already knows. It falls short of the every-token-earns-its-place anchor because the ~16-line "Citing Scientific Agent Skills" section and some safety points restated between Safety Boundary and Validate-in-layers could be trimmed.

4 / 5

Actionability

Fully executable guidance throughout: two complete copy-paste-ready protocol skeletons (Flex 2.29 and OT-2 2.28) with current load names, exact pinned uv commands for both robot lines, and concrete method-level directives (call configure_for_volume(volume) while empty, initialize() before read(), py_compile then simulate). Specific examples cover the common transfer cases and the bundled templates extend coverage.

5 / 5

Workflow Clarity

A clearly sequenced 7-step Authoring Workflow culminating in a 6-step "Validate in layers" sequence, plus a 6-item pre-execution safety checklist and an intake gate ("Do not write final protocol code until these facts are known"). For physical batch operations, validation is explicit at every layer (compile, simulate, inspect run log, App analysis, dry run) and the Common Failure Modes section supplies error-recovery guidance, matching the anchor with explicit validation steps and checklists.

5 / 5

Progressive Disclosure

Structure is strong against the actual bundle: seven references and six scripts all exist, are summarized in purpose tables, and are one level deep (the only cross-pointer is a sibling mention of modules_and_deck.md in api_reference.md). However, the Install and Simulate section instructs `uv pip install -r skills/opentrons-integration/requirements-flex.txt` and "Use requirements-ot2.txt instead", yet neither requirements file exists in the bundle — a broken path the reader would hit, which is exactly the kind of minor organization gap that distinguishes the 4 anchor from the 5 anchor.

4 / 5

Total

18

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20

Passed

Description

100%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

An exemplary description: third-person voice, comprehensive concrete actions, explicit "Use for..." triggers with natural domain vocabulary, and an explicit deferral boundary to pylabrobot. No weaknesses found against any anchor.

DimensionReasoningScore

Specificity

"Authors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots" lists five distinct concrete lifecycle actions against a precisely named domain, matching the anchor for multiple specific concrete actions with comprehensive coverage. It is not a 4 because coverage spans authoring through troubleshooting with no notable gaps in the action set.

5 / 5

Completeness

It explicitly answers "what" (the five-verb capability sentence) and "when" ("Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis") with concrete trigger phrases, matching the top anchor exactly. It even adds boundary guidance ("Use pylabrobot instead when one workflow must support multiple robot vendors"), going beyond the anchor's requirements rather than falling short of the both-present-but-could-be-more-explicit level at 4.

5 / 5

Trigger Term Quality

Natural user phrasings are comprehensively covered: "Opentrons", "Flex and OT-2 robots", "liquid handling", "deck and labware setup", "pipettes", "modules", "runtime parameters", "liquid classes", and "Opentrons App" — including product-name synonyms a real user would say. No meaningful natural terms are missing, so it fits the comprehensive-coverage anchor rather than the "a few natural terms missing" anchor at 4.

5 / 5

Distinctiveness Conflict Risk

The skill occupies a clear niche (vendor- and robot-named: Opentrons Protocol API v2, Flex, OT-2) and actively disambiguates against the nearest alternative ("Use pylabrobot instead when one workflow must support multiple robot vendors"), giving minimal conflict risk. This is a stronger fit than the "mostly distinct; minor overlap risk" anchor at 4.

5 / 5

Total

20

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20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
K-Dense-AI/scientific-agent-skills
Reviewed

Table of Contents

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