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metabolic-study-planner

Plan publishable constraint-based metabolic modelling studies when the user has a broad biological or metabolic-engineering topic but no concrete dataset, organism, model, or hypothesis. Selects feasible BiGG/COBRA models, objectives, perturbations, analyses, metrics, figures, and risk controls before FBA code is generated.

72

Quality

88%

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SKILL.md
Quality
Evals
Security

Quality

Content

77%Weight 40%Scale 1-3

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A highly actionable, well-sequenced planning skill with concrete model IDs, metrics, templates, and an explicit feasibility gate. Its weaknesses are minor verbosity from cross-domain analogies and a monolithic structure that does not use progressive disclosure across files.

Suggestions

Trim context-free analogies such as the collider/MFA comparison line to improve token efficiency.

Move the four Study Archetypes and/or the study_card.md template into one-level-deep reference files (e.g. references/archetypes.md) referenced from SKILL.md to apply progressive disclosure.

Consider tightening the Planning Inputs and default-organism tables by collapsing low-value 'Why' rationales into the main column.

DimensionReasoningScore

Conciseness

Mostly efficient structured tables, metrics, and templates, but includes unnecessary asides such as 'This is the MFA analogue of choosing a collider process and parameter scan before generating events' that do not earn their tokens.

2 / 3

Actionability

Provides concrete model IDs (iJO1366, iMM904, Recon3D, iNJ661), named products, a full study_card.md template, and specific required metrics; as an instruction-only planning skill, code absence is not penalized.

3 / 3

Workflow Clarity

Clear sequence (inputs -> archetype -> feasibility gate -> study card -> per-stage guidance) with an explicit validation checkpoint ('Proceed only if total score is at least 18/25. Otherwise choose a simpler organism...') and a study-card checklist.

3 / 3

Progressive Disclosure

Sections are well organized, but the body is an entirely monolithic ~225-line file with no bundle files; the four archetypes and the study-card template are inline content that could plausibly be split into one-level-deep references.

2 / 3

Total

10

/

12

Passed

Description

100%Weight 40%Scale 1-3

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, third-person description that clearly states concrete capabilities and an explicit 'when' trigger, with domain-appropriate keywords and low conflict risk. It does not pad with fluff or over-claim.

DimensionReasoningScore

Specificity

Lists multiple concrete actions ('Selects feasible BiGG/COBRA models, objectives, perturbations, analyses, metrics, figures, and risk controls'), matching the anchor for naming several specific actions.

3 / 3

Completeness

Explicitly answers both what ('Plan publishable constraint-based metabolic modelling studies') and when ('when the user has a broad biological or metabolic-engineering topic but no concrete dataset, organism, model, or hypothesis'), satisfying the explicit-trigger requirement.

3 / 3

Trigger Term Quality

Uses domain-natural terms a researcher would actually say ('metabolic-engineering', 'FBA', 'COBRApy', 'BiGG'), giving good coverage rather than generic jargon.

3 / 3

Distinctiveness Conflict Risk

The constraint-based metabolic modelling / FBA niche is highly specific with distinct triggers, making it unlikely to fire for unrelated skills.

3 / 3

Total

12

/

12

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

Total

15

/

16

Passed

Repository
aiming-lab/AutoResearchClaw
Reviewed

Table of Contents

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