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evo2

Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per-sequence likelihoods for variant effect scoring, (2) Embedding genomic windows for downstream classification, (3) Generating DNA conditioned on a prefix, (4) Scoring regulatory or coding regions across species.

71

Quality

89%

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SKILL.md
Quality
Evals
Security

Quality

Content

86%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A highly actionable, well-structured reference skill: executable code for every common case, informative model and troubleshooting tables, and clean single-file organization. The only weaknesses are minor — slightly overwrought prose in the remote-compute section and no explicit output-validation checkpoint.

Suggestions

Tighten the remote-compute prose: the sentences about suppressed/committed follow-ups and 'do not scan Job history' could be reduced to one line ('retain job_id; query c.attachJob(job_id).status()/result() when needed'), improving conciseness.

Add a brief validation checkpoint for scoring runs (e.g. check job.status() == succeeded before reading outputs.json) to close the minor workflow-validation gap.

DimensionReasoningScore

Conciseness

The body is dense and table-driven with no explanation of concepts Claude already knows, but a few spots could be trimmed — e.g. the remote-compute prose "A final .result() read reports whether its follow-up was suppressed or had already been committed; otherwise the app starts the later analysis turn for an unread final result" is wordy and confusing. Not score 5 because these minor instances of over-writing remain; not score 3 because they are isolated, not a pattern of padding.

4 / 5

Actionability

Fully executable, copy-paste-ready code throughout: install ("pip install evo2"), loading/scoring (Evo2("evo2_7b") with score_sequences), generation with all parameters, a concrete submitJob call, and troubleshooting rows with exact fixes ("Set HF_HUB_OFFLINE=1", "Pass list[str]"). Common cases (7B scoring, generation, remote jobs) are all covered.

5 / 5

Workflow Clarity

A clear sequence is present (prerequisites → install → load/score → generate → remote compute), and the remote-compute flow has explicit checkpoints (read compute_details, submit, retain job_id, query with attachJob), plus a troubleshooting table as a feedback loop. Not score 5 because there is no explicit validate-then-proceed step for scoring runs (e.g. verifying job status before consuming outputs), leaving minor validation gaps.

4 / 5

Progressive Disclosure

No bundle files exist, and the single SKILL.md is well-organized into tight sections (Prerequisites, How to run, Models, Output format, Decision tree, Remote compute, Performance, Troubleshooting) with the only external pointers — the remote-compute-ssh skill and compute_details — clearly signaled and one level deep. Content is appropriately placed in one file; nothing that belongs elsewhere is inlined and nothing is nested.

5 / 5

Total

18

/

20

Passed

Description

92%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong description: explicit what-and-when structure with four enumerated trigger cases, all in third-person imperative voice. The only gap is a modest set of natural synonyms (mutation, variant scoring) that would broaden trigger coverage.

DimensionReasoningScore

Specificity

"Score, embed, and generate DNA sequences" plus four concrete numbered actions — "Computing per-nucleotide or per-sequence likelihoods for variant effect scoring", "Embedding genomic windows for downstream classification", "Generating DNA conditioned on a prefix", "Scoring regulatory or coding regions across species" — is comprehensive, multi-action coverage with no vague filler.

5 / 5

Completeness

"Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model" states the what, and "Use this skill when: (1)…(4)" explicitly enumerates the when with concrete trigger cases. Not score 4 because the when-clause is fully explicit and enumerated, not merely present.

5 / 5

Trigger Term Quality

Natural phrases users would say are present ("DNA sequences", "variant effect", "generate DNA", "embedding"), but common synonyms and variations are missing — e.g. "mutation", "variant scoring", "DNA language model", "log-likelihood of a sequence" — so coverage is good rather than exhaustive.

4 / 5

Distinctiveness Conflict Risk

The niche is narrow (a DNA genomic foundation model for likelihoods/embeddings/generation) and Evo 2 is named directly, so it is clearly distinguishable from generic data or document skills. Not score 4 because the only conceivable overlap is with other genomic models (e.g. track predictors), and the description's likelihood/embedding/generate framing separates those cleanly.

5 / 5

Total

19

/

20

Passed

Validation

81%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 13 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

metadata_field

'metadata' should map string keys to string values

Warning

frontmatter_unknown_keys

Unknown frontmatter key(s) found; consider removing or moving to metadata

Warning

Total

13

/

16

Passed

Repository
aipoch/open-science
Reviewed

Table of Contents

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