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dnanexus-integration

DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.

65

Quality

77%

Does it follow best practices?

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SecuritybySnyk

Passed

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tessl review fix ./bundled/skills/dnanexus-integration/SKILL.md
SKILL.md
Quality
Evals
Security

Quality

Content

72%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured, highly actionable skill body with strong progressive disclosure backed by real reference files. The main weaknesses are generic best-practice padding and missing validation/feedback loops in the batch and pipeline workflows.

Suggestions

Add explicit validation/recovery checkpoints to the batch and multi-step pipeline patterns — e.g. check job state after `wait_on_done()`, retry or surface failed job logs before chaining the next step — to raise workflow_clarity to 3.

Trim the generic 'Best Practices' list (items like hardcoding credentials, logging, error handling are things Claude already knows) to domain-specific guidance such as instance-type sizing for genomics workloads or dxapp.json versioning conventions.

Remove the Overview section or fold it into the frontmatter description to avoid restating the same capability summary twice.

DimensionReasoningScore

Conciseness

The body is mostly efficient with dense dxpy/dx calls, but includes content Claude already knows (generic 'Best Practices' like 'Never hardcode credentials', 'Include informative log messages', 'Always wrap API calls in try-except') and an Overview that restates the frontmatter, so it is 'mostly efficient but could be tightened' rather than fully lean.

2 / 3

Actionability

Provides multiple copy-paste-ready, executable examples with real API calls and CLI commands — `dxpy.upload_local_file()`, `dxpy.download_dxfile()`, `dxpy.find_data_objects(classname='file', name='*.bam', ...)`, `@dxpy.entry_point('main')`, `dx build`, `dx login` — matching the 'fully executable code/commands; copy-paste ready' anchor.

3 / 3

Workflow Clarity

A clear 5-step decision tree sequences capability selection, but the batch-processing and multi-step pipeline patterns launch/chain jobs with only `wait_on_done()` and no validation or failure-recovery checkpoint; per the rubric's batch-operation cap, missing validation holds workflow_clarity at 2 rather than 3.

2 / 3

Progressive Disclosure

SKILL.md is an overview with quick-start examples inline, deferring detail to five clearly signaled one-level-deep references (e.g. 'See references/python-sdk.md for:'), and all five referenced files actually exist in references/, matching the 'clear overview with well-signaled one-level-deep references' anchor.

3 / 3

Total

10

/

12

Passed

Description

82%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A tight, specific, third-person description with strong platform-named triggers and concrete actions. Its main gap is the absence of an explicit 'Use when...' clause, which caps completeness at 2.

Suggestions

Append an explicit trigger clause, e.g. 'Use when working with DNAnexus, building/deploying dx apps or applets, using dxpy, or processing FASTQ/BAM/VCF on the DNAnexus platform.' to lift completeness from 2 to 3.

Consider adding '.dnanexus' / 'dx' command-line references and 'applet' as standalone trigger terms for users who phrase requests around the CLI.

DimensionReasoningScore

Specificity

Lists multiple concrete actions in third person — 'Build apps/applets', 'manage data (upload/download)', 'run workflows', 'FASTQ/BAM/VCF', 'genomics pipeline development and execution' — matching the 'lists multiple specific concrete actions' anchor.

3 / 3

Completeness

'What' is clearly stated, but there is no explicit 'Use when...' trigger clause; the 'when' is only implied by platform-specific terms, so per the judging guideline a missing explicit trigger caps completeness at 2 rather than 3.

2 / 3

Trigger Term Quality

Strong natural-term coverage a DNAnexus user would actually say: 'DNAnexus', 'dxpy Python SDK', 'apps/applets', 'upload/download', 'FASTQ/BAM/VCF', 'genomics pipeline', matching the 'good coverage of natural terms' anchor rather than just jargon.

3 / 3

Distinctiveness Conflict Risk

The highly specific 'DNAnexus cloud genomics platform' plus 'dxpy' and 'FASTQ/BAM/VCF' carve a clear niche unlikely to trigger for the wrong skill, matching the 'clear niche with distinct triggers' anchor.

3 / 3

Total

11

/

12

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
foryourhealth111-pixel/Vibe-Skills
Reviewed

Table of Contents

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