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bioservices

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

68

Quality

83%

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SKILL.md
Quality
Evals
Security

Quality

Content

80%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The body is actionable and well-structured with executable examples and a clean reference/scripts split, but workflow clarity is held back by missing validation checkpoints for batch and asynchronous operations, and some content redundancy.

Suggestions

Add explicit validation/feedback steps for batch and asynchronous workflows — e.g., for batch_id_converter.py include verifying output count against input count and handling unmapped IDs; for BLAST show polling getStatus until finished before retrieving results.

Remove the duplicated UniProt mapping example in section 5 (it repeats section 1's code) or cross-reference it instead of restating.

Tighten the 'When to Use This Skill' list, which overlaps the frontmatter description, to focus only on body-specific guidance.

DimensionReasoningScore

Conciseness

Mostly efficient with executable code and brief key-method lists, but some redundancy (e.g., the identifier-mapping example repeats the UniProt mapping code from section 1) and overlap between 'When to Use' and the description keeps it below level-5 leanness.

4 / 5

Actionability

Provides copy-paste-ready executable code with real method names, parameters, and example IDs throughout, plus concrete CLI invocations for the bundled scripts covering the common cases.

5 / 5

Workflow Clarity

Multi-service workflows are sequenced with numbered steps and script invocations, but batch operations (batch_id_converter.py) and asynchronous BLAST jobs lack explicit validation checkpoints or feedback loops, which the rubric caps at 3.

3 / 5

Progressive Disclosure

Clear overview with well-signaled one-level-deep references to three reference files and four scripts, all verified present, organized in a Resources section for easy navigation.

5 / 5

Total

17

/

20

Passed

Description

87%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

The description is strong: it concretely states the skill's purpose, gives explicit use-when triggers with named databases, and provides clear boundary guidance against adjacent skills. Minor room for more per-service keyword synonyms.

DimensionReasoningScore

Specificity

Lists several concrete actions ('querying multiple databases', 'cross-database analysis, ID mapping across services') and names specific services (UniProt, KEGG, ChEMBL, Reactome), with only minor gaps in per-service coverage — not a level-5 comprehensive enumeration.

4 / 5

Completeness

Explicitly answers both 'what' (unified Python interface to 40+ services) and 'when' ('Use when querying multiple databases... in a single workflow') with concrete trigger phrases and explicit negative boundary guidance.

5 / 5

Trigger Term Quality

Includes natural phrases users would say ('cross-database analysis', 'ID mapping', named databases) but omits common synonyms or file extensions, so it falls just short of comprehensive level-5 coverage.

4 / 5

Distinctiveness Conflict Risk

Occupies a clear multi-service niche and explicitly disambiguates from gget (single-database lookups) and biopython (sequence/file manipulation), giving minimal conflict risk.

5 / 5

Total

18

/

20

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

Total

15

/

16

Passed

Repository
googolme/run0204
Reviewed

Table of Contents

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