alignment-level-QC
Calculates technical mapping statistics for any aligned BAM file (ChIP or ATAC). It assesses the performance of the aligner itself by generating metrics on read depth, mapping quality, error rates, and read group data using samtools and Picard.Use this skill to check "how well the reads mapped" or to validate BAM formatting/sorting before further processing. Do NOT use this skill for biological signal validation (like checking for peaks or open chromatin) or for filtering/removing reads.
Quality
Validation
87%Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.
Validation — 14 / 16 Passed
Validation for skill structure
| Criteria | Description | Result |
|---|---|---|
name_field | Must contain only lowercase letters, numbers, and hyphens | Fail |
referenced_paths_exist | Referenced path issues: 2 missing | Warning |
Total | 14 / 16 Failed | |
- Repository
- majiayu000/claude-skill-registry
- Commit
8271354
- Reviewed
Table of Contents
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