Content
86%Weight 40%Scale 1-5Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.
The body is an exemplarily lean, domain-expert-oriented checklist: concrete runner commands with flag semantics, explicit preconditions and decision points, and a precise output contract. Weaknesses are minor — no example input-file formats and no explicit failure/retry handling around the preflight and QC gates.
Suggestions
Add a one-line example of the expected contrasts.tsv and sample_metadata.tsv format so the runner command is fully copy-paste ready.
Specify what to do when the preflight install plan or QC checks fail (fix/re-run loop), closing the last workflow-validation gap.
State how to locate the plugin-owned scripts (e.g., relative to the plugin install directory) so the commands work outside the plugin checkout.
| Dimension | Reasoning | Score |
|---|---|---|
Conciseness | The body is lean imperative bullets with zero re-teaching of concepts Claude already knows (no RNA-seq or DESeq2 tutorials), and no padding — every section carries operational content. Matches the 'lean and efficient; every token earns its place' anchor. | 5 / 5 |
Actionability | Concrete, executable commands are provided (run_bulk_rnaseq_de.py with flags, preflight with --emit-install-plan) plus explicit decision points and output artifacts. Minor gaps keep it below copy-paste-ready 5: no example contrasts.tsv/metadata row, and script paths assume the plugin layout without stating how to locate them. | 4 / 5 |
Workflow Clarity | The sequence is clear — confirm inputs, Preconditions gate (do not start until...), preflight, execute, outputs — with explicit validation checkpoints (replication, metadata matching, PCA outlier review) for a batch operation. The fix-and-retry loop when preflight or QC checks fail is only implicit, so it fits 'clear sequence with most checkpoints; minor validation gaps' rather than the 5 anchor with explicit feedback loops. | 4 / 5 |
Progressive Disclosure | No bundle files exist and nothing inlined clearly belongs in a separate file; the body is a well-organized set of short sections (Essential Inputs, Preconditions, Route, Decision Points, Outputs) that serves as a complete overview. Per the rubric's simple-skill note, well-organized sections with no need for external references warrant a 5. | 5 / 5 |
Total | 18 / 20 Passed |