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rhea-skill

Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Use when a user wants concise Rhea summaries

68

Quality

85%

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security

Quality

Content

100%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The body is an exemplary compact operational spec: rule lists, a complete copy-paste execution example, precise input/output contracts, and explicit failure semantics, with zero tutorial padding. All content is appropriately placed in SKILL.md for a skill this small, and the sole bundle reference resolves to a real file.

DimensionReasoningScore

Conciseness

The body is lean rule/specification lists with zero concept explanations, no padding, and no tutorial prose — "Use `scripts/rest_request.py` for all Rhea calls", "Return concise markdown summaries from the script JSON by default", "Failure returns `ok=false` with `error.code` and `error.message`" — every line adds operational information Claude cannot infer. This matches 'Lean and efficient; assumes Claude's competence; every token earns its place'. Not a 4 because there are no over-explanatory passages to trim at all.

5 / 5

Actionability

The content is fully executable: a copy-paste bash command (echo JSON | python scripts/rest_request.py), two complete ready-to-run JSON payloads covering free-text and ID search (e.g. `{"base_url":"https://www.rhea-db.org","path":"rhea","params":{"query":"RHEA:47148","format":"json"},"record_path":"results","max_items":5}`), an explicit base URL, endpoint, and response-format param, and named query patterns ("targeted ID search via `query=RHEA:<id>`" — verified to generalize to the script's params interface). This matches 'Fully executable; copy-paste ready code or commands; specific examples cover the common cases'. Not a 4 because no key execution detail is missing.

5 / 5

Workflow Clarity

This is a simple, single-task skill (build a JSON request, pipe it to scripts/rest_request.py, summarize the records) and the single action is unambiguous, which the simple-skill guidance allows to score 5. It also includes error-recovery checkpoints: "Failure returns `ok=false` with `error.code` and `error.message"` for interpreting failures, and "Re-run requests in long conversations instead of relying on older tool output" as a staleness guard. No destructive or batch operations exist, so no validation cap applies. Not a 4 because there are no sequencing gaps — operation rules, request construction, output handling, and failure handling are each explicitly covered.

5 / 5

Progressive Disclosure

The skill is ~34 lines with no need for external reference files, and the guidance says under-50-line skills with no external-reference need can score 5 with well-organized sections. Sections are cleanly split (Operating rules / Execution behavior / Input / Output / Execution / References), the only bundle file referenced (`scripts/rest_request.py`) exists on disk and is correctly pathed, and the References section explicitly closes the hierarchy: "No additional runtime references are required; keep the import package limited to this file and `scripts/rest_request.py`" — one level deep, no buried references. Not a 4 because organization and signaling leave no navigation ambiguity.

5 / 5

Total

20

/

20

Passed

Description

62%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

The description has a clear, specific niche (Rhea biochemical reaction search) with an explicit 'Use when' clause, but it under-sells the skill's supported search modes and omits natural trigger synonyms (enzyme, EC number, Rhea database). The what/when are both present, with the when-clause being the weaker half.

Suggestions

Enumerate the supported search modes in the what-clause, e.g. 'Submit compact Rhea reaction search requests by reaction ID, compound name, EC number, or free-text term', to raise specificity and completeness.

Add natural trigger synonyms users would say — 'enzyme reactions', 'EC number lookup', 'Rhea database' — to the 'Use when' clause so it triggers on phrasings that don't already mention Rhea summaries.

Make the when-clause concrete rather than circular: e.g. 'Use when the user asks about a biochemical reaction, wants to resolve a Rhea ID, or needs concise reaction summaries from rhea-db.org.'

DimensionReasoningScore

Specificity

"Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs" names the domain and one concrete action (submit reaction search requests) with two query targets, but omits other capabilities the body supports (EC number, compound name, free-text term searches), so coverage is not comprehensive — matching the anchor 'Names domain and 1-2 concrete actions, but not comprehensive'. It is not a 4 because several supported search modes are absent; not a 2 because the action is concrete, not generic.

3 / 5

Completeness

Both parts are present: what — "Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs"; when — "Use when a user wants concise Rhea summaries". This matches 'Has both what and when; when could be more explicit or specific' because the trigger clause is somewhat circular (it presupposes the user already knows Rhea) rather than naming concrete situations. Not a 5 because the when-clause lacks concrete trigger phrases; not a 3 because an explicit 'Use when...' clause is present.

4 / 5

Trigger Term Quality

The description includes "Rhea", "reaction search", "biochemical reactions", "reaction IDs", and "concise Rhea summaries" — relevant keywords a user working with this database would say — but misses common variations such as "enzyme", "EC number", "metabolite", "Rhea database", or "Rhea ID". This matches 'Some relevant keywords but missing common variations or synonyms'; it falls short of 4 because several natural synonyms the body explicitly supports are absent.

3 / 5

Distinctiveness Conflict Risk

The Rhea database niche is highly specific — "Rhea reaction search requests" and "reaction IDs" would not naturally trigger unrelated skills — matching 'Mostly distinct; minor overlap risk with closely related skills' (e.g., other bioinformatics/database-lookup skills covering enzymes or metabolism). Not a 5 because the trigger 'concise Rhea summaries' leans on the database name alone without fully disambiguating from generic reaction-lookup skills; not a 3 because the domain is clearly and narrowly named.

4 / 5

Total

14

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository

openai/plugins

Path

plugins/life-science-research/skills/rhea-skill/SKILL.md

Reviewed

Table of Contents

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