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neurokit2

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.

68

Quality

85%

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SKILL.md
Quality
Evals
Security

Quality

Content

78%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured overview for a broad toolkit: every capability section carries a concrete code sketch and a pointer to a real, one-level-deep reference file, and the analysis-mode rule is crisply stated. Weaknesses are modest — some duplicated example code between 'Core Capabilities' and 'Common Workflows', placeholder variables in section snippets, and absent validation/error-recovery checkpoints in the processing pipelines.

Suggestions

Deduplicate: the 'Common Workflows' Quick Start and Multi-Modal examples repeat code already shown in Core Capabilities sections 1 and 11 — replace them with workflows not already covered (e.g., a full EDA SCR analysis or an event-related EEG pipeline) or fold the runnable ecg_simulate Quick Start into section 1 and drop the rest.

Add a brief validation checkpoint to the main pipelines — e.g., after ecg_process show how to check signal quality (nk.ecg_quality / info['ECG_R_Peaks'] sanity check on detected peak count) and what to do when detection fails, which would lift workflow_clarity to 5.

Fix the small progressive-disclosure gap: ppg.md is listed in the References section but never linked from the PPG-related content (section 1 covers ECG/PPG but only links ecg_cardiac.md) — either link it inline where PPG analysis is described or merge its coverage explicitly.

DimensionReasoningScore

Conciseness

The body is efficient: no tutorial padding, no explanations of what ECG/EEG are, and each section is a compact capabilities list plus a short code block. It stops short of 5 due to redundant material — the 'Common Workflows' Quick Start ECG example repeats section 1's ecg_process/hrv calls, the Multi-Modal workflow repeats section 11's bio_process call, and the References section re-lists files already linked inline (including ppg.md, which no section links).

4 / 5

Actionability

Mostly executable, copy-paste-shaped code: real function names with realistic parameters (e.g., nk.ecg_process(ecg, sampling_rate=1000), nk.hrv(info['ECG_R_Peaks'], ...), and a fully runnable Quick Start using nk.ecg_simulate). Not a 5 because many per-section snippets depend on undefined placeholder variables (ecg_signal, peaks, trigger_channel) without showing their derivation, and parameters like nk.hrv(peaks) assume context the reader must get from the reference files.

4 / 5

Workflow Clarity

Sequences are clearly laid out — the ECG pipeline 'cleaning → R-peak detection → delineation → quality assessment' and the event-related vs interval-related mode-selection rule (< 10s / ≥ 10s) are explicit and actionable. Validation is mostly implicit (quality assessment is mentioned as a pipeline stage but no checkpoint shows how to act on it, and no error-recovery guidance exists for failed peak detection or bad channels), which keeps it below 5; this is analysis rather than destructive/batch work, so the destructive-cap does not apply.

4 / 5

Progressive Disclosure

This is the anchor 5 pattern: an overview SKILL.md where each of the 11 capability sections links to its own one-level-deep reference file (all 12 referenced files — ecg_cardiac.md, hrv.md, eeg.md, eda.md, rsp.md, ppg.md, emg.md, eog.md, signal_processing.md, complexity.md, epochs_events.md, bio_module.md — exist in ./references/), plus a consolidated References list and an explicit 'Load specific reference files as needed using the Read tool' navigation instruction. No nesting beyond one level, no orphan chains.

5 / 5

Total

17

/

20

Passed

Description

87%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong description that clearly states what the toolkit does and when to use it, with domain-appropriate trigger terms covering all six signal modalities. The main improvement space is adding user-side synonyms (GSR, HRV, EDF/BDF file extensions) that people type verbatim when requesting this kind of analysis.

Suggestions

Add common user-facing synonyms and acronyms to the trigger coverage: 'GSR' (galvanic skin response) for EDA, 'HRV' spelled out once as users often type the acronym directly, and data-file extensions like .edf/.bdf/.gdf that biosignal researchers work with.

Make the leading action verbs as concrete as the later clauses — e.g., 'Clean, process, and extract peaks/features from ECG, EEG... signals' instead of the generic 'processing toolkit for analyzing physiological data', which would lift specificity from 4 to 5.

Trim the 'Applicable for...' clause's most generic items (e.g., 'psychophysiology research') in favor of one or two task-shaped triggers (e.g., 'computing HRV metrics', 'detecting skin conductance responses') users are more likely to phrase as requests.

DimensionReasoningScore

Specificity

The description lists several concrete analysis actions — "heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment... multi-modal physiological signal integration" — alongside the enumerated signal types (ECG, EEG, EDA, RSP, PPG, EMG, EOG). It falls short of a 5 because the leading action verbs ("processing", "analyzing") are broad and the per-signal actions are named only at the category level; it exceeds a 3 because it goes well beyond 1-2 actions and covers the toolkit's domains comprehensively.

4 / 5

Completeness

It explicitly answers both questions: the "what" ("Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals") and the "when" ("Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements"), reinforced by an "Applicable for..." clause with additional concrete trigger scenarios — matching the anchor for a fully explicit what-and-when with concrete trigger phrases.

5 / 5

Trigger Term Quality

Strong coverage of the natural terms domain users say: "ECG, EEG, EDA, RSP, PPG, EMG, and EOG", "heart rate variability", "brain activity", "electrodermal responses", "eye movements", "psychophysiology research". A 5 is withheld because common synonyms and file formats users actually use are missing — e.g., "GSR" for electrodermal activity, "HRV" as an acronym users type verbatim, and biosignal data extensions like .edf/.bdf/.txt.

4 / 5

Distinctiveness Conflict Risk

The biosignal-processing niche is unmistakable (specific modality acronyms plus "psychophysiology research"), so it would not trigger for general data-analysis, ML, or document skills; it occupies a clear niche with minimal overlap risk beyond intentionally adjacent scientific-analysis skills.

5 / 5

Total

18

/

20

Passed

Validation

87%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 14 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_version

'metadata.version' is missing

Warning

frontmatter_unknown_keys

Unknown frontmatter key(s) found; consider removing or moving to metadata

Warning

Total

14

/

16

Passed

Repository

synthetic-sciences/openscience

Path

backend/cli/skills/biology/neurokit2/SKILL.md

Reviewed

Table of Contents

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