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tessl/pypi-rdkit

Platform wheels for RDKit - a comprehensive cheminformatics and machine-learning library with Python bindings

89

1.01x
Overview
Eval results
Files

rubric.jsonevals/scenario-3/

{
  "context": "This evaluation assesses how effectively the engineer uses RDKit's molecular fingerprinting and similarity calculation capabilities to solve the molecular comparison problem. The focus is exclusively on proper use of RDKit APIs for SMILES parsing, fingerprint generation, and Tanimoto similarity computation.",
  "type": "weighted_checklist",
  "checklist": [
    {
      "name": "SMILES Parsing",
      "description": "Uses Chem.MolFromSmiles() to convert SMILES strings into molecule objects for both input functions",
      "max_score": 20
    },
    {
      "name": "Fingerprint Generation",
      "description": "Generates molecular fingerprints using an appropriate RDKit fingerprinting function (e.g., GetMorganFingerprintAsBitVect, RDKFingerprint, or GetMACCSKeysFingerprint) for similarity comparison",
      "max_score": 25
    },
    {
      "name": "Tanimoto Calculation",
      "description": "Uses DataStructs.TanimotoSimilarity() (or DataStructs.FingerprintSimilarity with Tanimoto metric) to compute similarity scores between fingerprints",
      "max_score": 30
    },
    {
      "name": "Invalid Input Handling",
      "description": "Properly checks if MolFromSmiles() returns None (indicating invalid SMILES) and raises appropriate errors",
      "max_score": 15
    },
    {
      "name": "Batch Processing",
      "description": "Efficiently processes multiple candidate molecules in find_similar_molecules() by generating fingerprints and computing similarities for each candidate",
      "max_score": 10
    }
  ]
}

Install with Tessl CLI

npx tessl i tessl/pypi-rdkit

tile.json