Hybrid ML + physics binding affinity prediction. Empirical scoring, MM/GBSA rescoring, multi-method consensus, and batch virtual screening for protein-ligand complexes.

Computational analysis of immunology experimental data. ATAC-seq differential accessibility, immune cell tracking from microscopy, ELISA data processing with 4-parameter logistic fitting, immunohistochemistry quantification, antibody titer analysis, and cell cycle phase duration estimation. For flow cytometry use flow-cytometry-analysis; for scRNA-seq use scanpy.

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

OpenVINO — real-time object detection via Docker (NCS2, Intel GPU, CPU)

Signal messaging channel for Clawdbot agent

Matrix/Element messaging channel for Clawdbot agent

POST Aegis events to webhook URLs

Publish Aegis events to MQTT broker

Fire Aegis detection events in Home Assistant

Dataset annotation management — COCO labels, sequences, export, and Kaggle upload

User-level AI agents that travel with you across projects

Safely manage multiple GitHub identities (EMU + personal) in agent workflows

Master the uv package manager for fast Python dependency management, virtual environments, and modern Python project workflows. Use when setting up Python projects, managing dependencies, or optimizing Python development workflows with uv.

Squad branching model: dev-first workflow with insiders preview channel

用于查找代码示例、开源项目、GitHub Issue、技术问答、开发者讨论、HuggingFace 模型/数据集/Space。

home-dreaming 定时任务的 Promote 步骤，仅由该任务调用。

Generate Java/Groovy/TypeScript code following Rundeck development standards. Auto-loads development guidelines, formatting rules, and testing requirements.

YAML front matter (YFM) convention for markdown articles — memory entries, design notes, blog posts, RUNBOOKs, READMEs, any prose an agent or a pipeline may scan. Top-level fields (title, tag, link, date, author) for indexing and discovery. The `x-meta:` block is the x-cmd extension: it carries ontology fields that link the article into x-cmd's knowledge graph via `x ondb`. Apply unless a stricter spec forbids front matter. Helpers: `x yfm` (in design).

Split large JavaScript files into maintainable modules safely.

Query GitHub pull requests with jq filtering and reusable selectors.