bioservices
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
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Low
Low-risk findings worth noting
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tessl review fix ./skills/bioservices/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
scripts/protein_analysis_workflow.py ingests outsider-authored free text from the user-controlled CLI argument `PROTEIN_NAME` (and optional `EMAIL`), then uses it directly in runtime calls to UniProt `search(...)`/`retrieve(...)`, PSICQUIC `query(...)` (when available), and parses returned service text for downstream processing.
- Repository
- K-Dense-AI/scientific-agent-skills
- Commit
b2a92ba
- Audited
- Security analysis
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