deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
64
75%
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Low
Low-risk findings worth noting
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tessl review fix ./skills/deeptools/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
Skill runtime path only reads user-supplied file contents (BAM/bigWig/BED) via `scripts/validate_files.py`/deepTools scripts, so outsider-authored free text can be ingested when a user provides a poisoned BED (read as lines/fields) or similar file format.
- Repository
- K-Dense-AI/scientific-agent-skills
- Commit
b2a92ba
- Audited
- Security analysis
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