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gget

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.

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SKILL.md
Quality
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Security

Security

1 high severity finding. You should review these findings carefully before considering using this skill.

High

W007: Insecure credential handling detected in skill instructions.

What this means

The skill handles credentials insecurely by requiring the agent to include secret values verbatim in its generated output. This exposes credentials in the agent’s context and conversation history, creating a risk of data exfiltration.

Why it was flagged

The skill includes examples and parameter flags that indicate API keys/credentials may be provided directly on the CLI (e.g., gget gpt expecting an API key argument and gget cosmic supporting --email/--password), which can require the LLM to generate outputs containing secret values verbatim and thus creates an exfiltration risk even though env-var alternatives are recommended.

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Repository
K-Dense-AI/scientific-agent-skills
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Security analysis
Snyk

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