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mageck

Analyzes pooled CRISPR screen FASTQ reads and guide-count matrices with MAGeCK, validates guide libraries and contrasts, measures replicate and library QC, and produces gene hit rankings with effect sizes and FDR. Use for new knockout, CRISPRi, or CRISPRa screen analysis, enrichment or depletion contrasts, and MAGeCK count/test workflows; existing public dependency-score lookup belongs to DepMap.

Quality

92%

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security
Low

W012: Unverifiable external dependency detected (runtime URL that controls agent).

What this means

The skill fetches instructions or code from an external URL at runtime, and the fetched content directly controls the agent’s prompts or executes code. This dynamic dependency allows the external source to modify the agent’s behavior without any changes to the skill itself.

Why it was flagged

An operational download command fetches software from a third-party SourceForge project URL during setup, which represents a weak, unverifiable external dependency.

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Repository

K-Dense-AI/scientific-agent-skills

Path

skills/mageck/SKILL.md

Audited
Security analysis
Snyk

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