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omero-integration

Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

79

Quality

100%

Does it follow best practices?

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SecuritybySnyk

Passed

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SKILL.md
Quality
Evals
Security

Quality

Content

100%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The content is dense but purposeful: operational contracts, executable install/connection code, and a clear reference map with all referenced bundle files present. It avoids explaining concepts Claude already knows and structures detail into one-level-deep reference files.

DimensionReasoningScore

Conciseness

The body is lean and operational — it does not explain what OMERO, BlitzGateway, or libraries are, and every section (Operating Contract, Install, Credentials, Helpers, Capability Guide) carries actionable load. It is tighter than the level-2 anchor that pads with "good library" justifications, and assumes Claude's competence throughout.

3 / 3

Actionability

It provides copy-paste-ready, executable guidance: the `uv venv`/`uv pip install` install block, a complete exception-safe BlitzGateway Python snippet with try/finally, and concrete `python -B scripts/*.py --help` commands. This matches the level-3 anchor of fully executable, specific examples rather than pseudocode.

3 / 3

Workflow Clarity

Risky remote and write workflows are clearly sequenced with explicit checkpoints: the eight-step Operating Contract, dry-run-by-default/`--execute` gating, the numbered Final Review checklist, and "Do not connect until the user has selected..." validation before remote work. This exceeds the level-2 anchor where validation is implicit.

3 / 3

Progressive Disclosure

The SKILL.md is an overview with well-signaled one-level-deep references — the Capability Guide maps each topic to a real file in references/ (connection, data_access, metadata, image_processing, rois, tables, scripts, advanced, sources), and helpers live in scripts/, all verified to exist. This matches the level-3 anchor of an overview pointing cleanly to split reference files.

3 / 3

Total

12

/

12

Passed

Description

100%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

The description is specific, third-person, and provides both concrete capabilities and an explicit "Use for" trigger clause. It is clearly distinguishable and avoids vague fluff or over-claims.

DimensionReasoningScore

Specificity

The description enumerates concrete actions and surfaces — "inspect and automate microscopy data workflows," "tables, annotations, ROIs, rendering," "scoped OMERO inventory, metadata export, import/export planning" — matching the anchor that lists multiple specific concrete actions.

3 / 3

Completeness

It states both what the skill does ("Securely inspect and automate microscopy data workflows against OMERO.server...") and when to use it via an explicit "Use for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows" clause, satisfying the level-3 anchor for an explicit trigger.

3 / 3

Trigger Term Quality

It surfaces natural terms an OMERO user would actually say — "OMERO inventory," "metadata export," "import/export planning," "annotations," "ROIs" — giving good coverage rather than only internal jargon. It is not the level-2 anchor of a single keyword phrase because multiple natural trigger variations are present.

3 / 3

Distinctiveness Conflict Risk

OMERO.server microscopy integration is a clearly defined niche with distinct triggers, making it unlikely to fire for unrelated skills. It is well above the level-2 "could still overlap" anchor because no other common skill targets this domain.

3 / 3

Total

12

/

12

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_field

'metadata' should map string keys to string values

Warning

Total

15

/

16

Passed

Repository
K-Dense-AI/scientific-agent-skills
Reviewed

Table of Contents

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