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pathogen-variant-surveillance

Queries public GenSpectrum LAPIS data for pathogen genomic surveillance, current lineage nomenclature, weekly sequence proportions, reporting delays, and descriptive mutation frequencies. Use for variant surveillance, Pango lineage validation, dominant submitted lineages, Nextclade assignment provenance, SARS-CoV-2, influenza/H5N1 clades, RSV, mpox, measles, dengue, or LAPIS queries. Distinguishes sequence prevalence from infection prevalence, clades from genotypes, missing calls from reference matches, and sampling changes from biological growth advantage.

SKILL.md
Quality
Evals
Security
Low

W012: Unverifiable external dependency detected (runtime URL that controls agent).

What this means

The skill fetches instructions or code from an external URL at runtime, and the fetched content directly controls the agent’s prompts or executes code. This dynamic dependency allows the external source to modify the agent’s behavior without any changes to the skill itself.

Why it was flagged

The skill fetches runtime data from raw.githubusercontent.com for Pango nomenclature files under a weak/unknown provenance subject.

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Repository

K-Dense-AI/scientific-agent-skills

Path

skills/pathogen-variant-surveillance/SKILL.md

Audited
Security analysis
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