CtrlK
BlogDocsLog inGet started
Tessl Logo

tamarind

Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.

76

Quality

96%

Does it follow best practices?

Run evals on this skill

Adds up to 20 points to the overall score

View guide

SecuritybySnyk

Passed

No findings from the security scan

SKILL.md
Quality
Evals
Security

Quality

Content

92%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-crafted, highly actionable skill body with executable code, an explicitly sequenced and validated workflow, and clean progressive disclosure to verified reference files. The only weakness is mild verbosity in a few prose-heavy orientation sections.

Suggestions

Tighten the 'Choosing the right tool' section: convert the long prose orientation into a compact table or bulleted decision list keyed by function/modality to reduce token load.

Condense the 'Job settings, schemas, and validation' prose by moving the deep schema-shape distinctions (trimmed vs full, gating keys) into api_reference.md, leaving a one-line pointer plus the validateJob rule inline.

Consider trimming the repeated 'Always getJobSchema/validateJob' reminders now scattered across sections into a single stated invariant near the core workflow to reduce redundancy.

DimensionReasoningScore

Conciseness

Largely lean and assumes Claude's competence (no basics about what AlphaFold/PDB/REST are), focusing on non-obvious API gotchas; however some dense prose sections like 'Choosing the right tool' and 'Job settings' could be tightened. Not 5 due to minor verbosity; not 3 because most tokens earn their place and basics are not re-explained.

4 / 5

Actionability

Provides fully executable, copy-paste-ready Python and curl code covering discovery, submission, polling, and result download, with specific field constraints (e.g. jobName regex, length) and a concrete batch example plus an error-action table.

5 / 5

Workflow Clarity

The core workflow is explicitly sequenced (discover -> schema -> validate -> submit -> poll -> results) with numbered code steps, an explicit validateJob checkpoint before submit, and batch-polling feedback loops that break on terminal statuses including AggregationFailed. Validation is present, so the batch/destructive cap does not apply.

5 / 5

Progressive Disclosure

SKILL.md is a well-organized overview that points to four real, one-level-deep reference files (examples.md, api_reference.md, tool_catalog.md, workflows.md), each clearly signaled with a description of its contents; navigation is easy and content is appropriately split.

5 / 5

Total

19

/

20

Passed

Description

100%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, specific description that names concrete tools across many biology domains, provides an explicit 'Use when' trigger clause with platform-specific keywords, and uses correct third-person voice throughout. It is comprehensive yet focused, with minimal conflict risk.

DimensionReasoningScore

Specificity

Lists multiple concrete capability categories with named models (structure prediction: AlphaFold/Boltz/Chai/ESMFold; design: RFdiffusion/ProteinMPNN/BoltzGen; docking: DiffDock/Autodock Vina; plus binding-affinity, MSA, MD), matching the comprehensive-coverage anchor.

5 / 5

Completeness

Explicitly answers both 'what' (access/run open-source molecular design and structural biology tools via REST API or MCP server) and 'when' via an explicit 'Use when...' clause listing concrete triggers.

5 / 5

Trigger Term Quality

Covers natural trigger terms comprehensively including the platform name, URL variants (tamarind.bio, app.tamarind.bio/api), the x-api-key header, 'run in the cloud', 'batch sequences', and many tool-name synonyms users would say.

5 / 5

Distinctiveness Conflict Risk

Targets a clearly distinct niche (the Tamarind Bio platform) with unique triggers like 'Tamarind', 'tamarind.bio', and 'x-api-key header', minimizing overlap with other skills.

5 / 5

Total

20

/

20

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

metadata_field

'metadata' should map string keys to string values

Warning

Total

15

/

16

Passed

Repository
K-Dense-AI/scientific-agent-skills
Reviewed

Table of Contents

Is this your skill?

If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.