Content
87%Weight 40%Scale 1-5Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.
Concise, highly actionable content anchored by an executable example and sharp operational gotchas (CHAI_DOWNLOADS_DIR, ESM VRAM cost, MSA tradeoff). The main gap is workflow clarity: as a batch job it lacks an explicit validation/checkpoint loop, which caps that dimension.
Suggestions
Add a short numbered run workflow with an explicit validation checkpoint, e.g. 1) ensure output_dir is empty, 2) run inference, 3) check aggregate_score/iptm on outputs before keeping samples.
Turn the error table's recovery actions into a feedback loop (on PermissionError -> set CHAI_DOWNLOADS_DIR and retry; on CUDA OOM -> lower num_diffn_timesteps/split chains and retry) so the batch path has validate->fix->retry semantics.
State the confidence/clash filtering step inline (currently deferred to 'Next') so the keep/discard decision is part of the documented workflow rather than only a pointer.
| Dimension | Reasoning | Score |
|---|---|---|
Conciseness | Lean body that assumes competence — no 'what is a protein / what is co-folding' filler — and every section earns its tokens with positioning, runnable code, or a concrete gotcha. The Boltz-2/AlphaFold3 framing is useful differentiation, not generic padding. | 5 / 5 |
Actionability | Copy-paste-ready Python calling run_inference with concrete params, an equivalent shell invocation (chai-lab fold ... --use-msa-server), exact output filenames (pred.model_idx_{0..4}.cif), and a concrete ranking threshold (iptm > 0.5) — covers the common cases fully. | 5 / 5 |
Workflow Clarity | This is a batch operation that writes many files and refuses a non-empty output_dir, yet the guidance notes only 'clear or rotate it between calls' and a soft pass threshold without an explicit validate->fix->retry sequence; per the batch-operation cap, missing feedback-loop checkpoints holds this at 3 rather than 4. | 3 / 5 |
Progressive Disclosure | No bundle files are present and none are needed; the body is self-contained and cleanly sectioned (Running it, three named gotcha sections, an error table, Next pointer), so the simple-skill-with-good-organization bar is met. | 5 / 5 |
Total | 18 / 20 Passed |