microbiome-diversity-reporter

Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results and generate visualization reports for microbiome analysis.

Install with Tessl CLI

npx tessl i github:aipoch/medical-research-skills --skill microbiome-diversity-reporter

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Review — 73%

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Validation — 10 / 11 Passed

Validation for skill structure

SKILL.md

Review

Evals

Evaluation results

77%

36%

Gut Microbiome Species Richness Estimation

Alpha diversity metric analysis

Criteria

Without context

With context

Correct script invocation

70%

100%

OTU table format

100%

50%

Alpha-only flag

100%

Correct metric used

Valid metric value

JSON output format

100%

Output file specified

100%

Dependencies installed

30%

100%

Input flag used

100%

Result file produced

62%

100%

Statistics in output

100%

Without context: $0.8857 · 3m 32s · 34 turns · 38 in / 10,584 out tokens

With context: $0.8364 · 2m 53s · 30 turns · 186 in / 8,607 out tokens

99%

32%

Probiotic Treatment Microbiome Composition Study

Beta diversity with metadata and PERMANOVA

Criteria

Without context

With context

Correct script invocation

100%

87%

Beta-only flag

100%

Metadata file provided

100%

Metadata TSV format

100%

OTU table TSV format

100%

Output file written

37%

100%

Dependencies installed

100%

PERMANOVA present

100%

PCoA variance explained

100%

Bray-Curtis distance

100%

Written summary artifact

100%

Without context: $0.8897 · 3s · 1 turns · 3 in / 70 out tokens

With context: $0.7740 · 2m 26s · 31 turns · 390 in / 6,733 out tokens

94%

41%

Soil Microbiome Documentation for Environmental Impact Report

Full report with format selection

Criteria

Without context

With context

Correct script invocation

57%

100%

Full analysis flag

100%

Markdown format flag

100%

Output file written

42%

85%

OTU table format correct

100%

62%

Metadata SampleID column

100%

Metadata file passed

100%

Dependencies installed

75%

Report contains alpha section

100%

Report contains beta section

100%

Sample summary stats

100%

No large leftover files

100%

Without context: $0.6331 · 4m 11s · 28 turns · 33 in / 9,646 out tokens

With context: $1.2792 · 4m 46s · 42 turns · 198 in / 14,032 out tokens

Evaluated: 1 day ago
Agent: Claude Code

Table of Contents

Gut Microbiome Species Richness Estimation Probiotic Treatment Microbiome Composition Study Soil Microbiome Documentation for Environmental Impact Report

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