medical-research-skills

Use pathology roi selector for data analysis workflows that need structured execution, explicit assumptions, and clear output boundaries.

Generates comprehensive academic introductions for biological pathways, including signaling processes, markers, and inhibitors. Use when the user asks to introduce a pathway, molecule, or gene.

Simplifies informed consent documents into patient-friendly language while maintaining regulatory compliance. Readability assessment targeting 6th-8th grade level, risk/benefit clarification in table format, and FDA 21CFR50/ICH-GCP/HIPAA compliance validation.

Generate ethical, compliant, and patient-friendly recruitment advertisements for clinical trials.

Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter validation, result directory creation, and CSV or TXT format result export.

Generates complete programmed-cell-death (PCD) / regulated-cell-death (RCD) bulk-transcriptome oncology research designs from a user-provided disease and mechanism theme. Always use this skill whenever a user wants to design, plan, or structure a cancer bioinformatics study built around cell-death patterns, tumor microenvironment, prognostic modeling, immune landscape analysis, mutation profiling, and computational drug sensitivity. Covers five study patterns (mechanism-gene-set, subtype-discovery, prognostic-signature, immune-response stratification, translational drug-hypothesis) and always outputs four workload configs (Lite / Standard / Advanced / Publication+) with recommended primary plan, step-by-step workflow, figure plan, validation strategy, minimal executable version, publication upgrade path, and a strictly verified reference literature retrieval layer with real references only.

Access the RCSB Protein Data Bank (PDB) to search, download, and programmatically retrieve 3D macromolecular structures and metadata; use when you need structure discovery (text/sequence/3D similarity) or automated structural data ingestion for structural biology and drug discovery workflows.

Extract PDF selectable text and full-page or segmented page images (including tables) into Markdown with per-page headings and image links; use when you need both readable text and page visuals for PPT creation, review, or analysis.

Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials and Methods, Key Resources Table, Reagents, Antibodies, Consumables, Software, Equipment, Instruments, or Reagent Preparation.

Create literature-report PPTX decks from PDF papers. Use when you must extract a paper’s metadata, summarize the study, interpret Results/Figures/Tables, and generate slides with 1:1 figure-to-text alignment and layout rules (triggered by requests like “PDF to PPT”, “literature report slides”, or “turn this paper into a presentation”).

Perform basic local PDF operations (merge, split, extract pages/text/tables, create) when users request offline PDF processing without external services.

Convert research paper PDFs into literature-report PPTX decks using a fully offline workflow (extract text/figures, map captions, summarize findings, and generate slides). Use when you need to turn a PDF into a presentation deck, especially for scientific articles with figures and tables.

Conduct professional peer reviews for papers or theses, providing structured evaluations and improvement suggestions; use when you need a pre-submission assessment, an internal review, or academic quality control.

Assist in drafting professional peer review response letters. Trigger.

Use when writing medical school personal statements, residency application essays, fellowship statements, or graduate school admissions essays. Crafts compelling narratives highlighting clinical experiences, research achievements, and career motivations for healthcare education applications.

Expert system for generating comprehensive biomedical phenotype introductions with structured academic content. Use when users request detailed explanations of cellular phenotypes including concept, mechanism, regulation, and detection methods in Chinese academic writing.

Runtime, prompt-time behavioral guardrail that helps reduce PHI exposure in LLM-assisted workflows by detecting PHI-bearing prompts, avoiding unsafe tool actions that would pull more PHI in, and redirecting users toward de-identified or synthetic inputs. Use when the user is about to paste, query, or read clinical/patient data, or when an action (DB query, file read, tool output) may pull PHI into the conversation. Honors a [PHI-OK] attestation for synthetic / test data.

Analyze data with `phylogenetic-tree-styler` using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation.

Automatically generates a Markdown final-exam review plan or lab experiment schedule when you provide a date range, tasks/items, and available daily hours (via interactive prompts or a one-time JSON input).

Interactive visualization library for Python. Use it when you need hover tooltips, zoom/pan, selection, animations, or charts embeddable in web pages (e.g., dashboards, exploratory analysis, presentations).

Download PubMed/PMC literature using officially permitted PMC methods. Whenever the user wants to download PMC full text, batch-retrieve PMC Open Access Subset articles, save full text corresponding to PMID/PMCID locally, or needs to determine whether a PubMed article can be l...

Detects overlooked, underrepresented, weakly resolved, or poorly validated populations and subgroups within a biomedical research area so users can identify more precise and meaningful study populations. Always use this skill when the real question is not just what is under-studied, but which populations, strata, or subgroups are missing, thinly represented, superficially analyzed, pooled without resolution, or insufficiently validated in the current evidence base. Focus on meaningful subgroup gaps rather than generic calls for diversity.

Filter and match postdoctoral fellowship opportunities based on applicant nationality, years since PhD, and research field from a curated database.

Generate professional poster design concepts and optimized image-generation prompts, then automatically run a drawing script to produce the final poster image when a user needs a poster.

Use poster layout planner for other workflows that need structured execution, explicit assumptions, and clear output boundaries.