esmfold2
Predict quick protein structures with ESMFold-style workflows. Use when a task needs fast MSA-free folding, sequence triage, variant structure screening, or confidence review.
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Use this skill when a fast protein fold hypothesis is useful before heavier structure prediction.
Workflow:
- Normalize sequences into FASTA and record identifiers, mutations, truncations, domains, and oligomer assumptions.
- Verify the local or endpoint route before running.
- Save FASTA, model version, command or request body, predicted PDB/mmCIF, pLDDT/confidence outputs, and logs.
- Flag low-confidence regions, missing multimers, disorder, membrane regions, and sequence lengths outside the chosen route's limits.
- Use RDKit/3Dmol/PDB previews and source-backed comparisons when the output influences a research decision.
Use ESMFold-style predictions for triage unless an independent check supports the structural claim.
- Repository
- companion-inc/feynman
- Commit
95c51d9
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- First committed
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