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metabolomics-workbench-database

Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.

66

Quality

78%

Does it follow best practices?

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SecuritybySnyk

Low

Low-risk findings worth noting

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tessl review fix ./bundled/skills/metabolomics-workbench-database/SKILL.md
SKILL.md
Quality
Evals
Security

Quality

Content

82%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The body is highly actionable with executable examples and clear workflows, well-structured with a properly signaled one-level-deep reference; minor gains are possible in tightening explanatory prose and adding light validation checkpoints.

DimensionReasoningScore

Conciseness

Mostly efficient with lean per-capability sections and concrete code, though the Overview paragraph ('NIH Common Fund-sponsored platform hosted at UCSD...') and the repeated 'Key operations' bullets add minor over-explanation that could be trimmed.

4 / 5

Actionability

Fully executable copy-paste-ready `requests.get(...)` examples across all six capability areas and three workflows, covering the common cases with real endpoint URLs.

5 / 5

Workflow Clarity

Three workflows give clear numbered sequences with code per step, but they lack explicit validation checkpoints (e.g. 'confirm results returned before proceeding'); operations are read-only so the destructive cap does not apply, leaving minor validation gaps.

4 / 5

Progressive Disclosure

Good structure with a well-signaled one-level-deep reference (`references/api_reference.md`, confirmed to exist) and a clear 'Load this reference file when...' cue, though SKILL.md inlines a fair number of examples that edge past 'a few key examples inline'.

4 / 5

Total

17

/

20

Passed

Description

75%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

The description is specific, distinct, and action-oriented, but lacks an explicit 'Use when...' trigger clause, leaving the 'when' only weakly implied and capping completeness at 3.

Suggestions

Add an explicit 'Use when...' clause, e.g. 'Use when querying metabolite structures, standardizing metabolite names via RefMet, performing m/z mass searches, or retrieving metabolomics study data.'

Include a few more natural synonyms users might say ('mass spectrometry', 'lipidomics', 'metabolite IDs') to broaden trigger coverage.

Keep the concrete action list but tie it directly to trigger phrases so both 'what' and 'when' are explicit.

DimensionReasoningScore

Specificity

Lists multiple concrete actions — 'Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata' — covering the API's capabilities comprehensively, matching the anchor for multiple specific concrete actions.

5 / 5

Completeness

The 'what' is clear (access/query the Workbench REST API), but there is no 'Use when...' trigger clause; 'for metabolomics and biomarker discovery' is only a weakly implied when, which caps completeness at 3 per the rubric guideline.

3 / 5

Trigger Term Quality

Good coverage of natural domain terms ('metabolomics', 'biomarker discovery', 'metabolites', 'm/z searches'), but misses common synonyms such as 'mass spectrometry' spelled out or 'lipidomics', so it sits just below comprehensive.

4 / 5

Distinctiveness Conflict Risk

Names a highly specific niche (NIH Metabolomics Workbench, RefMet, m/z) with distinct triggers and minimal overlap risk with other skills.

5 / 5

Total

17

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
foryourhealth111-pixel/Vibe-Skills
Reviewed

Table of Contents

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