pdb-database
Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes. Also use to get metadata about biomolecular structure experiments.
73
90%
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Low
Low-risk findings worth noting
Low
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
The required workflow fetches schema/results/metadata over the public RCSB network (e.g., `scripts/fetch_schema.py` / `scripts/search_pdb.py` call `CLIENT.fetch_bytes(...)` and then write decoded response text to files), which can contain outsider-authored free text that is then ingested by downstream parsing/LLM context; no explicit exclusion applies.
- Repository
- google-deepmind/science-skills
- Commit
0b42509
- Audited
- Security analysis
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