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geo-database

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

69

Quality

66%

Does it follow best practices?

Impact

Pending

No eval scenarios have been run

SecuritybySnyk

Advisory

Suggest reviewing before use

Optimize this skill with Tessl

npx tessl skill review --optimize ./scientific-skills/geo-database/SKILL.md
SKILL.md
Quality
Evals
Security

Security

1 medium severity finding. This skill can be installed but you should review these findings before use.

Medium

W011: Third-party content exposure detected (indirect prompt injection risk)

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

Third-party content exposure detected (high risk: 0.90). The SKILL.md (and references/geo_reference.md) explicitly instructs the agent to fetch and parse public, user-submitted GEO content (via Entrez/E-utilities, GEOparse.get_GEO, and FTP downloads from ftp.ncbi.nlm.nih.gov), and to read metadata/SOFT/MINiML/series matrix files which are then used to select samples, group comparisons, and drive analysis/processing decisions, so untrusted third-party content can materially influence agent behavior.

Report incorrect finding
Repository
googolme/run0204
Audited
Security analysis
Snyk

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