Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
69
66%
Does it follow best practices?
Impact
Pending
No eval scenarios have been run
Advisory
Suggest reviewing before use
Optimize this skill with Tessl
npx tessl skill review --optimize ./scientific-skills/geo-database/SKILL.mdSecurity
1 medium severity finding. This skill can be installed but you should review these findings before use.
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Third-party content exposure detected (high risk: 0.90). The SKILL.md (and references/geo_reference.md) explicitly instructs the agent to fetch and parse public, user-submitted GEO content (via Entrez/E-utilities, GEOparse.get_GEO, and FTP downloads from ftp.ncbi.nlm.nih.gov), and to read metadata/SOFT/MINiML/series matrix files which are then used to select samples, group comparisons, and drive analysis/processing decisions, so untrusted third-party content can materially influence agent behavior.
4902409
If you maintain this skill, you can claim it as your own. Once claimed, you can manage eval scenarios, bundle related skills, attach documentation or rules, and ensure cross-agent compatibility.