geo-database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
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Low
Low-risk findings worth noting
Fix and improve this skill with Tessl
tessl review fix ./scientific-skills/geo-database/SKILL.mdLow
Low-risk findings.
1 low severity finding. Worth noting, but not necessarily harmful.
W011: Third-party content exposure detected (indirect prompt injection risk)
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
Third-party content exposure detected (high risk: 0.90). The SKILL.md (and references/geo_reference.md) explicitly instructs the agent to fetch and parse public, user-submitted GEO content (via Entrez/E-utilities, GEOparse.get_GEO, and FTP downloads from ftp.ncbi.nlm.nih.gov), and to read metadata/SOFT/MINiML/series matrix files which are then used to select samples, group comparisons, and drive analysis/processing decisions, so untrusted third-party content can materially influence agent behavior.
- Repository
- googolme/run0204
- Commit
4902409
- Audited
- Security analysis
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