Service Operations

Neo4j Graph Database

uv run imas-codex graph start       # Start (auto-detects SLURM/SSH/local)
uv run imas-codex graph stop        # Stop
uv run imas-codex graph status      # Check status
uv run imas-codex graph shell       # Interactive Cypher shell
uv run imas-codex graph profiles    # List all profiles and ports
uv run imas-codex graph export      # Export graph archive
uv run imas-codex graph load <f>    # Load archive
uv run imas-codex graph pull        # Pull latest from GHCR
uv run imas-codex graph backup      # Create neo4j-admin dump
uv run imas-codex graph clear       # Clear graph (auto-backup first)

Ports by Location

Location	Bolt	HTTP
iter	7687	7474
tcv	7688	7475
jt-60sa	7689	7476

Neo4j Safety Rules

Never delete Lucene write.lock files — corrupts vector indexes
Always backup before destructive operations
Never use DETACH DELETE without confirmation
Use NOT (x IN [...]) instead of x NOT IN [...] (Cypher 5 syntax)

Embedding Server

uv run imas-codex embed start         # Start via SLURM
uv run imas-codex embed start -g 2    # Start with 2 GPUs
uv run imas-codex embed start -f      # Foreground (debugging/inside SLURM batch)
uv run imas-codex embed stop          # Stop SLURM job + cleanup rogues
uv run imas-codex embed restart       # Stop + start
uv run imas-codex embed status        # Health + SLURM job + node state
uv run imas-codex embed logs          # View SLURM logs
uv run imas-codex embed service install  # Install systemd service

Embedding Configuration

Model: Qwen/Qwen3-Embedding-0.6B (dimension: 256)
Default: 4× P100 GPUs on titan partition
Port: 18765 (HTTP)
SLURM script: slurm/codex-embed.sh

Troubleshooting

Symptom	Fix
`embed status` shows node draining	Ask admin to resume node
Server healthy but no SLURM job	`imas-codex embed stop` kills rogues
Embedding calls timeout	Check tunnel: `lsof -i :18765`
Rapid FAILED jobs	Check `imas-codex embed logs`, run `uv sync` on node

LLM Proxy (LiteLLM)

uv run imas-codex llm start           # Start LiteLLM proxy
uv run imas-codex llm stop            # Stop
uv run imas-codex llm restart         # Restart
uv run imas-codex llm status          # Check status
uv run imas-codex llm spend           # Cost tracking
uv run imas-codex llm logs            # View logs

sn generate and sn benchmark require the LLM proxy to be running. Model names must use the openrouter/ prefix (e.g. openrouter/anthropic/claude-sonnet-4-5) to preserve cache_control blocks — prompt caching is handled provider-side by OpenRouter, not by this codebase.

SSH Tunnels

uv run imas-codex tunnel start iter   # Start SSH tunnel to remote host
uv run imas-codex tunnel stop         # Stop tunnel
uv run imas-codex tunnel status       # Show active tunnels

HPC Job Management

uv run imas-codex hpc status          # Active SLURM allocations
uv run imas-codex hpc shell           # Interactive compute shell
uv run imas-codex hpc run <cmd>       # Execute on compute node
uv run imas-codex hpc submit <script> # Submit batch job
uv run imas-codex hpc attach <jobid>  # Attach to running job
uv run imas-codex hpc cancel <jobid>  # Cancel job
uv run imas-codex hpc info <jobid>    # Job details

MCP Server

uv run imas-codex serve                                  # Full mode (all tools)
uv run imas-codex serve --read-only                      # Search/read only
uv run imas-codex serve --dd-only --transport streamable-http  # DD-only container
uv run imas-codex serve --transport stdio                 # For MCP clients

Critical Rules

All services MUST run as SLURM jobs — never nohup, screen, tmux, or ssh &
Check SLURM allocation before starting services: squeue -u $USER
Never start services directly on compute nodes via SSH — use SLURM
If a node is draining, the fix is to get the node resumed — not work around SLURM

service-ops