Dependency Health Check (Inline Orchestration)

You ARE the orchestrator. Execute this workflow directly without spawning a separate orchestrator agent.

Workflow Overview

Beads Init → Audit → Create Issues → Update by Priority → Close Issues → Verify → Beads Complete

Max iterations: 3 Priorities: critical → high → medium → low Beads integration: Automatic issue tracking

Phase 1: Pre-flight & Beads Init

1. Setup directories:

   mkdir -p .tmp/current/{plans,changes,backups}

2. Validate environment:

   • Check package.json exists
   • Check type-check and build scripts exist
   • Check lockfile exists (pnpm-lock.yaml, package-lock.json, yarn.lock)

3. Create Beads wisp:

   bd mol wisp exploration --vars "question=Dependency audit and update"

   IMPORTANT: Save the wisp ID (e.g., mc2-xxx) for later use.

4. Initialize TodoWrite:

   [
     {"content": "Dependency audit", "status": "in_progress", "activeForm": "Auditing dependencies"},
     {"content": "Create Beads issues", "status": "pending", "activeForm": "Creating issues"},
     {"content": "Fix critical dependency issues", "status": "pending", "activeForm": "Fixing critical deps"},
     {"content": "Fix high priority dependency issues", "status": "pending", "activeForm": "Fixing high deps"},
     {"content": "Fix medium priority dependency issues", "status": "pending", "activeForm": "Fixing medium deps"},
     {"content": "Fix low priority dependency issues", "status": "pending", "activeForm": "Fixing low deps"},
     {"content": "Verification audit", "status": "pending", "activeForm": "Verifying updates"},
     {"content": "Complete Beads wisp", "status": "pending", "activeForm": "Completing wisp"}
   ]

Phase 2: Detection

Invoke dependency-auditor via Task tool:

subagent_type: "dependency-auditor"
description: "Audit all dependencies"
prompt: |
  Audit the entire codebase for dependency issues:
  - Security vulnerabilities (npm audit / pnpm audit)
  - Outdated packages (major/minor/patch)
  - Unused dependencies (via Knip)
  - Deprecated packages
  - License compliance issues
  - Categorize by priority (critical/high/medium/low)

  Generate: dependency-scan-report.md

  Return summary with issue counts per priority.

After dependency-auditor returns:

1. Read dependency-scan-report.md
2. Parse issue counts by priority
3. If zero issues → skip to Phase 7 (Final Summary)
4. Update TodoWrite: mark audit complete

Phase 3: Create Beads Issues

For each dependency issue found, create a Beads issue:

# Critical security vulnerabilities (P0)
bd create "DEP-SEC: {package}@{version} - {vulnerability}" -t bug -p 0 -d "{description}" \
  --deps discovered-from:{wisp_id}

# High - outdated major versions with breaking changes (P1)
bd create "DEP: {package} major update {old} → {new}" -t chore -p 1 -d "{description}" \
  --deps discovered-from:{wisp_id}

# Medium - minor updates, deprecated packages (P2)
bd create "DEP: {package} update {old} → {new}" -t chore -p 2 -d "{description}" \
  --deps discovered-from:{wisp_id}

# Low - patch updates, unused deps (P3)
bd create "DEP: {package} - {issue}" -t chore -p 3 -d "{description}" \
  --deps discovered-from:{wisp_id}

Track issue IDs in a mapping for later closure.

Update TodoWrite: mark "Create Beads issues" complete.

Phase 4: Quality Gate (Pre-update)

Run inline validation:

pnpm type-check
pnpm build

• If both pass → proceed to updates
• If fail → report to user, exit

Phase 5: Update Loop

For each priority (critical → high → medium → low):

1. Check if issues exist for this priority

   • If zero → skip to next priority

2. Update TodoWrite: mark current priority in_progress

3. Claim issues in Beads:

   bd update {issue_id} --status in_progress

4. Invoke dependency-updater via Task tool:

   subagent_type: "dependency-updater"
   description: "Update {priority} dependencies"
   prompt: |
     Read dependency-scan-report.md and fix all {priority} priority issues.
   
     For each issue:
     1. Backup package.json and lockfile
     2. Update ONE dependency at a time
     3. Run type-check and build after each update
     4. If fails, rollback and skip
     5. Log change to .tmp/current/changes/deps-changes.json
   
     Generate/update: dependency-updates-implemented.md
   
     Return: count of updated deps, count of failed updates, list of updated dep IDs.

5. Quality Gate (inline):

   pnpm type-check
   pnpm build

   • If FAIL → report error, suggest rollback, exit
   • If PASS → continue

6. Close updated issues in Beads:

   bd close {issue_id_1} {issue_id_2} ... --reason "Dependency updated"

7. Update TodoWrite: mark priority complete

8. Repeat for next priority

Phase 6: Verification

After all priorities updated:

1. Update TodoWrite: mark verification in_progress

2. Invoke dependency-auditor (verification mode):

   subagent_type: "dependency-auditor"
   description: "Verification audit"
   prompt: |
     Re-audit dependencies after updates.
     Compare with previous dependency-scan-report.md.
   
     Report:
     - Issues fixed (count)
     - Issues remaining (count)
     - New issues introduced (count)

3. Decision:

   • If issues_remaining == 0 → Phase 7
   • If iteration < 3 AND issues_remaining > 0 → Go to Phase 2
   • If iteration >= 3 → Phase 7 with remaining issues

Phase 7: Final Summary & Beads Complete

1. Complete Beads wisp:

   # If all updated
   bd mol squash {wisp_id}
   
   # If nothing found
   bd mol burn {wisp_id}

2. Create issues for remaining items (if any):

   bd create "DEP REMAINING: {package} - {issue}" -t chore -p {priority} \
     -d "Not updated in audit. May require manual intervention. See dependency-scan-report.md"

3. Generate summary for user:

## Dependency Health Check Complete

**Wisp ID**: {wisp_id}
**Iterations**: {count}/3
**Status**: {SUCCESS/PARTIAL}

### Results
- Found: {total} dependency issues
- Fixed: {fixed} ({percentage}%)
- Remaining: {remaining}

### By Priority
- Critical: {fixed}/{total}
- High: {fixed}/{total}
- Medium: {fixed}/{total}
- Low: {fixed}/{total}

### Beads Issues
- Created: {count}
- Closed: {count}
- Remaining: {count}

### Validation
- Type Check: {status}
- Build: {status}

### Artifacts
- Audit: `dependency-scan-report.md`
- Updates: `dependency-updates-implemented.md`

4. Update TodoWrite: mark wisp complete

5. SESSION CLOSE PROTOCOL:

   git status
   git add .
   bd sync
   git commit -m "chore(deps): {fixed} dependencies updated ({wisp_id})"
   bd sync
   git push

Error Handling

If quality gate fails:

Rollback available: .tmp/current/changes/deps-changes.json

To rollback:
1. Read changes log
2. Restore package.json and lockfile from .tmp/current/backups/
3. Run pnpm install
4. Re-run workflow

If worker fails:

• Report error to user
• Keep Beads wisp open for manual completion
• Suggest manual intervention
• Exit workflow

If Beads command fails:

• Log error but continue workflow
• Beads tracking is enhancement, not blocker

Quick Reference