extracting-clinical-entities
Run clinical and biomedical named-entity recognition on medical text with OpenMed's analyze_text. Use when the user wants to extract diseases, drugs, anatomy, genes, or other biomedical entities from notes; needs NER output as dict/json/html/csv; wants to filter by confidence, group entities, toggle sentence detection, or save spans to JSONL; or wants the openmed analyze CLI. Pairs with loading-openmed-models and choosing-openmed-models, and runs after deidentifying-clinical-text in a privacy-first pipeline.
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- maziyarpanahi/openmed
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