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tooluniverse-cancer-variant-interpretation

Clinical interpretation of somatic cancer mutations for precision oncology. Transforms a gene + variant + cancer-type input into an actionable report: clinical evidence tier (CIViC, OncoKB), therapeutic options (FDA-approved + investigational), resistance mechanisms, prognosis, and matching clinical trials. Use for tumor-board variant calls, somatic-mutation actionability assessment, and treatment selection. Always cancer-type-specific.

68

Quality

81%

Does it follow best practices?

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security

Quality

Content

62%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A well-structured, mostly actionable skill body with a clear phased workflow and explicit verification/fallback gates. Its main weaknesses are re-explained background biology, runnable code deferred to a missing file, and a broken reference to ANALYSIS_DETAILS.md.

Suggestions

Create the referenced ANALYSIS_DETAILS.md (or inline the key per-phase code snippets) so the promised 'detailed code snippets and API call patterns' are actually available, since the file currently does not exist.

Trim the biological concept explanations in 'Driver vs Passenger Reasoning' and 'Resistance Reasoning' to the tool-selection implications, removing biology Claude already knows (e.g., what hotspot/truncating mutations mean).

Move the dense 'Tool Reference (Verified Parameters)' tables into a separate reference file referenced one level deep, keeping SKILL.md as a lean overview with just the most-used tools.

DimensionReasoningScore

Conciseness

Mostly dense and useful (parameter tables, tool signatures, fallback chains), but sections like 'Driver vs Passenger Reasoning' and 'Resistance Reasoning' re-explain oncology biology (EGFR T790M, MET amplification bypass) that Claude already knows, so it could be tightened.

2 / 3

Actionability

Provides concrete verified parameter tables and one inline executable call signature (ESM_explain_variant_mechanism), but the promised 'detailed code snippets and API call patterns' are deferred to ANALYSIS_DETAILS.md, which does not exist — so copy-paste-ready code is largely absent.

2 / 3

Workflow Clarity

Clear phased sequence (Phase 0-8) with an explicit CRITICAL Phase 0 parameter-verification gate and a Fallback Strategy providing error-recovery feedback loops (empty result -> alternate tool), plus a referenced completeness checklist.

3 / 3

Progressive Disclosure

Sections are well-organized, but the sole one-level-deep reference ('see ANALYSIS_DETAILS.md') points to a file that is not present in the bundle, and dense reference material (tool tables, reasoning strategies) is kept inline rather than split out.

2 / 3

Total

9

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12

Passed

Description

100%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, third-person description that states concrete capabilities and an explicit 'Use for' trigger set in a distinct clinical niche. It answers both what the skill does and when to invoke it without padding or over-claiming.

DimensionReasoningScore

Specificity

Lists multiple concrete actions: 'clinical evidence tier (CIViC, OncoKB), therapeutic options (FDA-approved + investigational), resistance mechanisms, prognosis, and matching clinical trials' — each is a specific, distinct capability rather than vague language.

3 / 3

Completeness

Explicitly answers both what ('Transforms a gene + variant + cancer-type input into an actionable report...') and when ('Use for tumor-board variant calls...'), with a clear explicit 'Use for' trigger clause.

3 / 3

Trigger Term Quality

Natural clinical triggers are present: 'Use for tumor-board variant calls, somatic-mutation actionability assessment, and treatment selection' — terms a precision-oncology user would plausibly say when needing this skill.

3 / 3

Distinctiveness Conflict Risk

Clear niche (somatic cancer mutation interpretation for precision oncology) with cancer-type-specific, tumor-board-oriented triggers that are unlikely to fire for unrelated skills.

3 / 3

Total

12

/

12

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
mims-harvard/ToolUniverse
Reviewed

Table of Contents

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