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tooluniverse-data-wrangling

Universal data access patterns for downloading and parsing scientific data when ToolUniverse tools don't cover the source, only return metadata, or you need bulk records. Use for VCF/h5ad/BAM/SDF/GCT parsing, multi-step API workflows (search to filter to download to parse), thousands of records at once, or sources with no dedicated tool. Write Python code via Bash for every step.

76

Quality

93%

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SecuritybySnyk

Low

Low-risk findings worth noting

SKILL.md
Quality
Evals
Security

Low

Low-risk findings.

1 low severity finding. Worth noting, but not necessarily harmful.

Low

W011: Third-party content exposure detected (indirect prompt injection risk).

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

The skill’s runtime workflow is built around calling external scientific APIs using end-user-supplied search terms/IDs and then parsing the returned text/JSON/CSV (e.g., requests.get + resp.json/pandas read_csv), which can include outsider-authored free text from those providers and will be ingested by the LLM as part of the downloaded results.

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Repository
mims-harvard/ToolUniverse
Audited
Security analysis
Snyk

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