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tooluniverse-disease-research

Generate comprehensive disease research reports covering genetics (causal genes, GWAS, OMIM), pathways (Reactome, KEGG), drugs (existing therapies, repurposing candidates), clinical trials, epidemiology (prevalence, incidence), and phenotypes (HPO). Use for full disease overviews, comprehensive disease characterization, and orphan/rare-disease profiling.

66

Quality

80%

Does it follow best practices?

Run evals on this skill

Adds up to 20 points to the overall score

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SecuritybySnyk

Low

Low-risk findings worth noting

The canonical home for this skill is tooluniverse-disease-research in mims-harvard/ToolUniverse

SKILL.md
Quality
Evals
Security

Quality

Content

71%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The content is well-organized and actionable with concrete tools and a clear report-first workflow, but its progressive disclosure is fundamentally undermined because every referenced bundle file is missing. Supplying the referenced files would raise the progressive_disclosure score substantially.

Suggestions

Create the five referenced files (REPORT_TEMPLATE.md, RESEARCH_PROTOCOL.md, tool_usage_details.md, TOOLS_REFERENCE.md, EXAMPLES.md) so the body's pointers resolve, or inline the essential content and remove the dangling links.

Add explicit validation checkpoints to the report-first workflow (e.g., verify the report file was written, retry on tool error) to support the iterative batch-writing process.

Remove the broken cross-skill reference (skills/tooluniverse-rare-disease-diagnosis/scripts/clinical_patterns.py) or correct the path, since it currently points to a nonexistent script.

DimensionReasoningScore

Conciseness

Mostly efficient and assumes Claude's competence (no over-explanation of basic concepts), with a few sections like 'LOOK UP, DON'T GUESS' that restate philosophy Claude already applies, keeping it just below the 5-anchor lean baseline.

4 / 5

Actionability

Provides concrete tool names, a 10-dimension mapping table, and one fully executable ZOOMA Python snippet, but the bulk of the per-section tool calls are deferred to a referenced file that does not exist, leaving minor gaps versus copy-paste-ready coverage.

4 / 5

Workflow Clarity

Clear report-first sequence and progressive-update pattern with an end-of-run quality checklist, but it lacks explicit in-process validation/error-recovery checkpoints for the iterative file-writing batch operation, capping it just below 5.

4 / 5

Progressive Disclosure

The body references REPORT_TEMPLATE.md, RESEARCH_PROTOCOL.md, tool_usage_details.md, TOOLS_REFERENCE.md, EXAMPLES.md and a cross-skill script, but none of these files exist in the bundle, so navigation breaks despite the references being clearly signaled.

2 / 5

Total

14

/

20

Passed

Description

90%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

The description is strong: third-person voice, concrete actions across named domains, and an explicit 'Use for...' trigger clause. It clearly answers both what the skill does and when to invoke it.

DimensionReasoningScore

Specificity

Lists multiple concrete actions and domains — 'Generate comprehensive disease research reports covering genetics (causal genes, GWAS, OMIM), pathways (Reactome, KEGG), drugs... clinical trials, epidemiology... phenotypes (HPO)' — comprehensive coverage matching the 5-anchor example.

5 / 5

Completeness

Explicitly answers both 'what' ('Generate comprehensive disease research reports covering...') and 'when' ('Use for full disease overviews, comprehensive disease characterization, and orphan/rare-disease profiling'), matching the 5-anchor pattern.

5 / 5

Trigger Term Quality

Includes natural phrases a user would say ('disease research reports', 'full disease overviews', 'disease characterization', 'orphan/rare-disease profiling') plus domain terms, but lacks a few common synonyms/variations and file-extension-style triggers to reach 5.

4 / 5

Distinctiveness Conflict Risk

Occupies a clear niche (multi-database disease research) with distinct triggers ('orphan/rare-disease profiling', named databases), giving it minimal conflict risk with other skills.

5 / 5

Total

19

/

20

Passed

Validation

93%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation15 / 16 Passed

Validation for skill structure

CriteriaDescriptionResult

relative_links

Relative link issues: 5 missing

Warning

Total

15

/

16

Passed

Repository
mims-harvard/ToolUniverse
Reviewed

Table of Contents

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