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tooluniverse-drug-repurposing

Identify drug repurposing candidates via target-based, compound-based, and disease-based strategies. Combines drug-target-disease network reasoning with mechanism rationale, clinical-trial precedent, and patent/regulatory feasibility. Use for hypothesis-generating repurposing for orphan diseases, finding existing drugs for new indications, and prioritizing candidates by evidence and feasibility.

Quality

85%

Does it follow best practices?

Run evals on this skill

Adds up to 20 points to the overall score

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SecuritybySnyk

Low

Low-risk findings worth noting

The canonical home for this skill is tooluniverse-drug-repurposing in mims-harvard/ToolUniverse

SKILL.md
Quality
Evals
Security

Quality

Content

71%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The body is dense with high-value, non-obvious operational detail — exact tool parameter quirks, response-nesting paths, HTTP error semantics, and a concrete scoring/evidence-grading framework. Its weaknesses are broken references to nonexistent bundle files (PROCEDURES.md, REFERENCE.md, EXAMPLES.md, REPORT_TEMPLATE.md), some duplicated explanations, and one pseudocode procedure.

Suggestions

Create the referenced bundle files (PROCEDURES.md, REFERENCE.md, EXAMPLES.md, REPORT_TEMPLATE.md) or remove the pointers — as delivered, every reference in the Reference Files section and the 'See: PROCEDURES.md' callout is a dead link.

Move the detailed Patent Landscape Check, LINCS/L1000FWD, and NCATS Translator subsections into a reference file, keeping only a short pointer plus the key gotcha (USPTO_API_KEY requirement) in SKILL.md; the USPTO 403 explanation is also duplicated in the Troubleshooting table.

Replace the dose-feasibility pseudocode (which ends in 'pass # Parse actual values from results') with executable code that actually parses ChEMBL activity values, and consolidate the thrice-stated 10x dose principle into one place.

DimensionReasoningScore

Conciseness

Almost all content is non-obvious operational knowledge Claude cannot know ("Param: `query=` (NOT `target_name=`)", response-nesting paths like "data.disease.associatedTargets.rows", 403-vs-404 semantics), but there is real duplication: the USPTO_API_KEY/403 explanation appears in both the Patent Landscape Check and the Troubleshooting table, and the 10x dose-feasibility principle is stated three times ("How to Interpret" item 2, Best Practices item 4, and the dose-feasibility procedure). Efficient with trimmable repetition fits 4; it is not 5 because of this duplicated material, and not 3 because nothing explains concepts Claude already knows.

4 / 5

Actionability

The Quick Start is executable end-to-end with real tool names and response paths, and the tool catalog gives exact parameter names with misuse warnings ("medicinalproduct= (NOT drug_name=)", "newline-separated string, NOT array"). However, the dose-feasibility procedure is pseudocode whose parsing step is literally "pass # Parse actual values from results", so guidance is mostly but not fully executable — the 4 anchor, not 5.

4 / 5

Workflow Clarity

Phases 1-5 are clearly sequenced, strategy selection is required before tool use ("Identify which strategy applies FIRST"), and "How to Interpret and Combine Results" plus the Troubleshooting table provide checkpoints and error-recovery paths (e.g., "Patent tools return HTTP 403 → USPTO_API_KEY missing/invalid"). Validation is framed as interpretive questions ("Does the drug actually hit the target at achievable doses?") rather than explicit pass/fail gates mid-workflow, so it lands at 4 rather than 5's explicit validation steps and feedback loops.

4 / 5

Progressive Disclosure

The body signals one-level-deep references ("See: PROCEDURES.md for detailed step-by-step procedures" and a Reference Files section listing REFERENCE.md, EXAMPLES.md, PROCEDURES.md, REPORT_TEMPLATE.md), but none of these files exist in the bundle — the pointers are dead ends. Meanwhile substantial advanced content (Patent Landscape Check, LINCS/L1000FWD, NCATS Translator subsections) is inlined directly in SKILL.md. This matches the 3 anchor: structure present, references signaled but broken, and content that should be separate is inline — not 4, whose references must actually resolve.

3 / 5

Total

15

/

20

Passed

Description

92%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

Strong description: third-person voice, concrete enumeration of the three repurposing strategies and supporting evidence types, plus an explicit 'Use for...' clause with natural trigger phrases. The only gap is a missing common synonym like 'drug repositioning'.

DimensionReasoningScore

Specificity

"Identify drug repurposing candidates via target-based, compound-based, and disease-based strategies" and "Combines drug-target-disease network reasoning with mechanism rationale, clinical-trial precedent, and patent/regulatory feasibility" enumerate multiple concrete actions in third person, covering identification, evidence integration, and prioritization with no vague filler. This matches the 5 anchor (multiple specific actions, comprehensive) rather than 4 because coverage spans the full task surface, not just a few actions with gaps.

5 / 5

Completeness

The what is explicit ("Identify drug repurposing candidates via ... strategies") and the when is an explicit trigger clause: "Use for hypothesis-generating repurposing for orphan diseases, finding existing drugs for new indications, and prioritizing candidates by evidence and feasibility." Both are concrete and explicit, matching the 5 anchor exactly.

5 / 5

Trigger Term Quality

"drug repurposing candidates", "orphan diseases", "finding existing drugs for new indications", and "prioritizing candidates" are natural user phrasings, but common synonyms such as "drug repositioning" and "off-label" are absent. Good coverage with a few natural terms missing fits the 4 anchor, below 5's comprehensive-synonym coverage.

4 / 5

Distinctiveness Conflict Risk

The niche is narrow and consistently named ("drug repurposing", "new indications", "orphan diseases") with nothing generic that would fire on unrelated biomedical or document skills. Fits the 5 anchor: clear niche with distinct triggers and minimal conflict risk.

5 / 5

Total

19

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository

mims-harvard/ToolUniverse

Path

plugins/tooluniverse/skills/tooluniverse-drug-repurposing/SKILL.md

Reviewed

Table of Contents

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