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tooluniverse-enzyme-kinetics

Enzyme kinetics — Michaelis-Menten Km, Vmax, kcat (turnover), and kcat/Km (catalytic efficiency / specificity constant) from substrate-velocity data, plus inhibition-mechanism analysis (competitive / uncompetitive / non-competitive, Ki). Fits the MM equation by nonlinear regression (and reports Lineweaver-Burk for reference). Use when you have substrate concentrations and initial reaction velocities and need kinetic parameters or to classify an inhibitor. NOT for BRENDA database lookups of published constants (use the BRENDA tools).

76

Quality

95%

Does it follow best practices?

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SecuritybySnyk

Passed

No findings from the security scan

SKILL.md
Quality
Evals
Security

Quality

Content

100%

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

An exemplary skill body: lean, actionable, with a clear sequenced workflow, explicit validation/feedback loops, and a well-signaled single reference to a verified bundle script. No significant weaknesses.

DimensionReasoningScore

Conciseness

The body is lean and operationally focused — compact tables and code blocks with no padded prose or generic concept explanations; the interpretive notes are tied to the tool's output (e.g. 'R²≥0.98 good; check residuals') rather than filler.

3 / 3

Actionability

Provides fully executable, copy-paste-ready `tu run EnzymeKinetics_calculate '{...}'` commands with real data arrays and a runnable script path, plus concrete parameter interpretation guidance.

3 / 3

Workflow Clarity

Clear Step 1–5 sequence with explicit validation checkpoints (Km must lie inside the tested range, R²≥0.98, residual-curvature checks, substrate-inhibition flag) and error-recovery guidance in the Gotchas section.

3 / 3

Progressive Disclosure

Well-organized sections with a single one-level-deep reference to the real bundle file `scripts/fit_michaelis_menten.py` and a Related skills pointer; the SKILL.md stays an overview while the executable detail lives in the script.

3 / 3

Total

12

/

12

Passed

Description

90%

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A strong, specific description with explicit when/what triggers and a clear disambiguating NOT-for clause. The only weakness is the second-person 'you have' in the trigger clause, which the rubric penalizes on specificity.

Suggestions

Rephrase the trigger in third person to avoid the specificity penalty, e.g. 'Use when substrate concentrations and initial reaction velocities are available and kinetic parameters or inhibitor classification are needed.'

DimensionReasoningScore

Specificity

Lists concrete actions ('Km, Vmax, kcat... kcat/Km', 'inhibition-mechanism analysis (competitive / uncompetitive / non-competitive, Ki)', 'Fits the MM equation by nonlinear regression'), but the second-person phrasing 'Use when you have substrate concentrations' incurs the rubric's −1 specificity penalty.

2 / 3

Completeness

Explicitly answers both what ('Fits the MM equation by nonlinear regression... inhibition-mechanism analysis') and when ('Use when you have substrate concentrations and initial reaction velocities and need kinetic parameters or to classify an inhibitor').

3 / 3

Trigger Term Quality

Natural user-facing terms are well covered — 'Michaelis-Menten', 'Km', 'Vmax', 'kcat', 'substrate-velocity data', 'classify an inhibitor', 'kinetic parameters' — matching what a user would actually say.

3 / 3

Distinctiveness Conflict Risk

Clear niche with an explicit negative trigger ('NOT for BRENDA database lookups of published constants (use the BRENDA tools)') that disambiguates it from sibling skills.

3 / 3

Total

11

/

12

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
mims-harvard/ToolUniverse
Reviewed

Table of Contents

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