tooluniverse-expression-data-retrieval
Retrieve gene expression and omics datasets from ArrayExpress and BioStudies with gene disambiguation and quality assessment. Use for finding RNA-seq/microarray datasets by organism/tissue/condition, comparing across studies (case-control, time-series, dose-response), and assessing dataset suitability before downloading. Always uses English search terms.
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Low
Low-risk findings worth noting
W011: Third-party content exposure detected (indirect prompt injection risk).
What this means
The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.
Why it was flagged
In SKILL.md Phase 2 “Data Retrieval (Internal)”, the runtime calls `tu.tools.arrayexpress_search_experiments(...)` with `keywords` (user-provided free text) and then fetches metadata via `arrayexpress_get_experiment(...)` / `arrayexpress_get_experiment_samples(...)` / `arrayexpress_get_experiment_files(...)`, ingesting outsider-authored text contained in ArrayExpress/BioStudies experiment titles/descriptions/annotations at runtime.
- Repository
- mims-harvard/ToolUniverse
- Commit
7a0ceb2
- Audited
- Security analysis
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