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tooluniverse-gwas-drug-discovery

Transform GWAS signals into drug targets and repurposing opportunities. Connects GWAS-significant loci to causal genes via fine-mapping/eQTL, then to druggable proteins via DGIdb/OpenTargets, then to existing drugs via ChEMBL. Use for GWAS-to-target hypothesis generation, druggable-fraction analysis of disease loci, and human-genetics-validated drug-repurposing prioritization.

72

Quality

89%

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SecuritybySnyk

Low

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SKILL.md
Quality
Evals
Security

Quality

Content

78%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

A detailed, highly actionable body with excellent executable examples and a clearly sequenced six-step workflow. Its main weakness is progressive disclosure: it advertises five reference files that do not exist in the bundle and inlines content that should live in those files.

Suggestions

Create the referenced REFERENCE.md, EXAMPLES.md, REPORT_TEMPLATE.md, PROCEDURES.md, and QUICK_START.md in ./references/ (or remove the Reference Files section) so signaled navigation does not dead-end.

Move the large inline blocks (All Tools by Category, Interpretation tables, Troubleshooting) into the appropriate reference files, keeping SKILL.md as a concise overview that points one level deep.

Tighten the Overview section, which restates the frontmatter description, to avoid redundant tokens at the top of the body.

DimensionReasoningScore

Conciseness

The body is mostly efficient and high-signal — the Reasoning Strategy, Parameter Gotchas, and Quick Start each earn their tokens with specialized, non-obvious guidance (LOF/GOF direction, parameter caveats). It does not over-explain basics Claude already knows, but the Overview bullets restate the frontmatter description and the tool catalogs are somewhat long. Matches the 4 anchor (efficient, minor trimmable instances); not a 5 because of the redundant Overview and inline tool listings.

4 / 5

Actionability

It provides fully executable, copy-paste-ready Python in the Quick Start with inline parameter corrections (e.g., 'use disease_trait not trait', 'ensemblId lowercase d', DGIdb fallback), a Wrong/Correct gotcha table, a concrete scoring formula, and a decision tree covering the common cases. Matches the 5 anchor (fully executable, copy-paste ready, common cases covered); not a 4 because the guidance is concrete and complete rather than having gaps.

5 / 5

Workflow Clarity

Six workflow steps are clearly sequenced, each with Input/Process/Tools, and the Target Prioritization Decision Tree plus 'integrate multiple lines of evidence before committing' provide checking structure. Matches the 4 anchor (clear sequence, most checkpoints present, minor validation gaps); not a 5 because there are no explicit validate-then-proceed checkpoints between steps, though this is an analytical/research workflow rather than a destructive or batch operation, so the 3-cap does not apply.

4 / 5

Progressive Disclosure

The body has reasonable section structure and a dedicated, clearly-labeled Reference Files section, but all five referenced files (REFERENCE.md, EXAMPLES.md, REPORT_TEMPLATE.md, PROCEDURES.md, QUICK_START.md) are absent from the references/scripts/assets bundle — the navigation leads to dead ends — and substantial content (All Tools by Category, Interpretation tables, Troubleshooting) is inlined that belongs in those separate files. Matches the 3 anchor (some structure, references present but broken, content that should be separate is inline); not a 4 because missing referenced files are worse than 'minor organization gaps'.

3 / 5

Total

16

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20

Passed

Description

100%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

A high-quality, third-person description that crisply states both the multi-step pipeline (what) and three concrete use-case triggers (when). It is specific, comprehensive, and distinctive with minimal conflict risk.

DimensionReasoningScore

Specificity

The description lists multiple concrete actions across a full pipeline: 'Connects GWAS-significant loci to causal genes via fine-mapping/eQTL, then to druggable proteins via DGIdb/OpenTargets, then to existing drugs via ChEMBL.' This is comprehensive, multi-step, and concrete — matching the 5 anchor rather than the 4 anchor which only expects 'several specific actions' with gaps.

5 / 5

Completeness

It explicitly answers both 'what' (transform GWAS signals into drug targets/repurposing via a loci→genes→proteins→drugs pipeline) and 'when' ('Use for GWAS-to-target hypothesis generation, druggable-fraction analysis of disease loci, and human-genetics-validated drug-repurposing prioritization'). Both are explicit with concrete trigger phrases, matching the 5 anchor; not a 4 because the 'when' is specific and multi-clause rather than merely adequate.

5 / 5

Trigger Term Quality

It covers natural domain terms comprehensively including synonyms and specific tool/data names — 'GWAS signals', 'drug targets', 'repurposing opportunities', 'GWAS-to-target hypothesis generation', 'druggable-fraction analysis', 'drug-repurposing prioritization', plus DGIdb/OpenTargets/ChEMBL. Matches the 5 anchor (comprehensive coverage incl. synonyms); a 4 would leave notable natural terms missing, which it does not.

5 / 5

Distinctiveness Conflict Risk

It carves a clear niche (GWAS-to-drug-target translation) anchored by distinctive technical triggers (fine-mapping/eQTL, L2G, DGIdb, OpenTargets, ChEMBL) that would not plausibly fire for unrelated skills. Minimal conflict risk, matching the 5 anchor; a 4 would require minor overlap with closely related skills, which is not the case.

5 / 5

Total

20

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20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository
mims-harvard/ToolUniverse
Reviewed

Table of Contents

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