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tooluniverse-gwas-finemapping

Statistical fine-mapping of GWAS loci using credible sets (SuSiE, FINEMAP) and locus-to-gene scoring (Open Targets L2G). Identifies likely causal variants and target genes — distinct from positional 'nearest gene' which is often wrong. Use for prioritizing causal variants at GWAS hits, comparing fine-mapping methods, and converting lead SNPs to target genes.

64

Quality

75%

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SecuritybySnyk

Low

Low-risk findings worth noting

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tessl review fix ./plugin/skills/tooluniverse-gwas-finemapping/SKILL.md
SKILL.md
Quality
Evals
Security

Low

Low-risk findings.

1 low severity finding. Worth noting, but not necessarily harmful.

Low

W011: Third-party content exposure detected (indirect prompt injection risk).

What this means

The skill exposes the agent to untrusted, user-generated content from public third-party sources, creating a risk of indirect prompt injection. This includes browsing arbitrary URLs, reading social media posts or forum comments, and analyzing content from unknown websites.

Why it was flagged

The workflow ingests outsider-authored free text via runtime API responses that are ultimately driven by user-provided search terms (e.g., `gwas_search_studies` / `gwas_search_studies_for_disease` accept arbitrary `disease_term` and the model then reads/returns result text from the APIs).

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Repository
mims-harvard/ToolUniverse
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Security analysis
Snyk

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