Content
71%Weight 40%Scale 1-5Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.
A well-structured, tool-dense skill body with a clear phased workflow, verified examples, and useful failure-mode guidance. Its weaknesses are inline reference material that should be split into bundle files and missing explicit validation checkpoints in the pipeline.
Suggestions
Move the KEGG pathway table (hsa00600–hsa00565 with enzymes and disease relevance) and the lipid class enrichment script into a references/ file, keeping only a summary table plus a clearly signaled link in SKILL.md.
Add an explicit validation checkpoint in Phase 0, e.g. 'Confirm the returned LIPID MAPS exact mass matches the observed precursor m/z (±ppm tolerance) before classifying'.
Reconcile the Core Tools table with the workflow: add 'PubChem_get_CID_by_compound_name' and 'LipidMaps_search_by_formula' (both used in Phase 0) or remove them from the examples.
| Dimension | Reasoning | Score |
|---|---|---|
Conciseness | The body is dense with high-value, non-obvious material — tool tables, real query examples, KEGG IDs with enzymes, and verified caveats (e.g., 'classification can come back as an empty array'). Minor over-explanation keeps it from a 5: the opening 'Distinct from general metabolomics...' paragraph and parts of the Reasoning Strategy restate biology Claude largely knows. | 4 / 5 |
Actionability | Concrete, executable tool calls with real parameters and outputs appear in every phase (e.g., 'SwissLipids_search(query="PC(16:0/18:1)") → entity_id "SLM:000088148"' and the verified FASN gene lookup). Not a 5 because a few tools used in the workflow ('PubChem_get_CID_by_compound_name', 'LipidMaps_search_by_formula') are absent from the Core Tools table and have no example output. | 4 / 5 |
Workflow Clarity | The 5-phase pipeline (identity → classification → pathway → disease → report) is clearly sequenced with an ASCII diagram, and failure-recovery routes are documented ('If name search fails, try PubChem', 'fall back to LIPID MAPS'). Not a 5 because explicit validation checkpoints are missing — e.g., no step to confirm a returned LMSP ID's exact mass against the observed m/z before proceeding. | 4 / 5 |
Progressive Disclosure | The single 200-line SKILL.md is well-sectioned (When to Use, Core Tools, Workflow, Limitations) but has no bundle files, so content that belongs at one level of depth is inlined: the 8-row KEGG pathway table and the lipid class enrichment script are prime candidates for a references/ file. This matches 'some structure but content that should be separate is inline' rather than the good-split anchor at 4. | 3 / 5 |
Total | 15 / 20 Passed |