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tooluniverse-meta-analysis

Meta-analysis / evidence synthesis — pool effect sizes across studies (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas) with fixed- or random-effects models, quantify heterogeneity (Q, I², τ²), and build a forest plot. Use when you have results from MULTIPLE studies and need a single pooled estimate, or to synthesize evidence from a systematic review / multiple GWAS / replicated experiments. Handles the error-prone effect-size + standard-error preparation (converting OR/HR/CI, two-group means±SD, proportions, and correlations into the (effect, SE) the pooling step needs).

78

Quality

98%

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SecuritybySnyk

Passed

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The canonical home for this skill is tooluniverse-meta-analysis in mims-harvard/ToolUniverse

SKILL.md
Quality
Evals
Security

Quality

Content

100%Weight 40%Scale 1-5

Reviews the quality of instructions and guidance provided to agents. Good implementation is clear, handles edge cases, and produces reliable results.

The body is a model skill document: dense reference tables, executable commands, flagged pitfalls with explicit remediation, and conditional guidance for edge cases. It is simultaneously lean and complete — nothing is padded, and no critical step, validation rule, or honest limitation is missing.

DimensionReasoningScore

Conciseness

Lean and table-driven throughout with no conceptual padding — no explanation of what meta-analysis or these statistics are; every rule carries a specific operational payload ("2 × 1.96 assumes a 95% CI; use 2 × 1.645 for 90%", "Q_p_value < 0.10 → statistically significant heterogeneity", "With ≥10 studies, inspect a funnel plot / Egger's test; with <10, state that small-study bias cannot be assessed"). Matches the anchor where every token earns its place; even the limitations section is behavior-directing rather than explanatory.

5 / 5

Actionability

Fully executable guidance: a copy-paste `tu run MetaAnalysis_run` command with real values and a documented return schema, the helper script invocation with its exact CSV column sets (verified against scripts/meta_analysis.py), exact conversion formulas for each input form, and a ready-to-use reporting template with a worked example ("pooled OR was 1.51 (95% CI 1.33–1.72 ...)"). Covers the common cases across all effect-measure types.

5 / 5

Workflow Clarity

A five-step numbered workflow with the error-prone step explicitly flagged ("Step 1 ← do this carefully", "THE ERROR-PRONE STEP"), input validation rules (log-transform ratio measures, "One direction", "Same effect measure"), decision tables for fixed-vs-random and I² interpretation, a scale foot-gun warning with explicit remediation ("exp() the pooled_effect and CI bounds back"), conditional guidance for edge cases (borderline I², I²>75% → don't pool), and an ordered reporting checklist. Since this is an analytical (non-destructive) workflow, the batch/destructive validation cap does not apply; the checkpoints present match the top anchor.

5 / 5

Progressive Disclosure

SKILL.md is an appropriately sized operational overview; the single bundle file (scripts/meta_analysis.py) exists, is clearly signaled with its usage and supported column sets, and all references are one level deep — including the cross-skill pointer to ../tooluniverse-statistical-modeling/references/cox_regression.md and the related-skills section. Nothing that belongs in a separate reference file is inlined (the conversion and interpretation tables are needed on every run), and navigation via the step headers is easy.

5 / 5

Total

20

/

20

Passed

Description

96%Weight 40%Scale 1-5

Based on the skill's description, can an agent find and select it at the right time? Clear, specific descriptions lead to better discovery.

An excellent description: a concrete multi-action capability list, an explicit 'Use when...' clause with natural trigger phrases and synonyms, and a differentiating note about the error-prone effect-size preparation step. Only minor overlap risk with adjacent statistical/GWAS skills keeps distinctiveness at 4 rather than 5.

DimensionReasoningScore

Specificity

Lists multiple concrete actions — "pool effect sizes across studies ... with fixed- or random-effects models", "quantify heterogeneity (Q, I², τ²)", "build a forest plot", and converting "OR/HR/CI, two-group means±SD, proportions, and correlations into the (effect, SE)" — with comprehensive coverage across measure types (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas). This matches the anchor for multiple specific concrete actions with comprehensive coverage; nothing is vague or generic.

5 / 5

Completeness

Explicitly answers both questions: the "what" (pooling with fixed/random-effects models, heterogeneity quantification, forest plot, effect-size conversion) and a concrete "Use when you have results from MULTIPLE studies and need a single pooled estimate, or to synthesize evidence from a systematic review / multiple GWAS / replicated experiments" trigger clause. Matches the anchor for clearly and explicitly answering both what AND when with concrete trigger phrases.

5 / 5

Trigger Term Quality

Natural phrases users would actually say are comprehensively covered with synonyms: "meta-analysis / evidence synthesis", "pooled estimate", "systematic review", "forest plot", "GWAS", "replicated experiments", plus the specific effect-measure names. Clearly matches the top anchor for comprehensive natural-term coverage rather than anchor 4, which is for descriptions with notable missing synonyms.

5 / 5

Distinctiveness Conflict Risk

"Meta-analysis / evidence synthesis" gated on "results from MULTIPLE studies" is a clear niche with distinct triggers (pooling, forest plot, I²), but terms like "correlations", "GWAS betas", and "mean differences" create minor overlap risk with closely related sibling statistical/GWAS skills. Anchor 4 ("mostly distinct; minor overlap risk with closely related skills") fits slightly better than anchor 5 because the description does not draw an explicit boundary against those adjacent single-study-analysis skills.

4 / 5

Total

19

/

20

Passed

Validation

100%

Checks the skill against the spec for correct structure and formatting. All validation checks must pass before discovery and implementation can be scored.

Validation — 16 / 16 Passed

Validation for skill structure

No warnings or errors.

Repository

mims-harvard/ToolUniverse

Path

plugins/tooluniverse/skills/tooluniverse-meta-analysis/SKILL.md

Reviewed

Table of Contents

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